Scaffold Ga0272436_1000262

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000262
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127652
• Total Scaffold Genes: 166
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (50.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F061401	Metagenome	131	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000262135	F000597	N/A	MKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYSNLTVQDHTIDTAFMLIT
Ga0272436_1000262138	F017941	N/A	MKIADLKKNNDQSIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272436_1000262139	F013598	N/A	MNFIIDLFDSYDYNAILTVICRLSKERHYIFCITDDEDITAEKTAEMLIQ
Ga0272436_1000262144	F006206	GAG	LCKLDEILSKENYFEKSFLIDTHLIFQKRSFSLRSLIDSDSVVYTIIHFNLVDKVCEKLKIQSISLTKEKLIRDYDEKISKKTITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272436_1000262145	F061401	N/A	LNNDQRVIQEIKNKLKRVNDVSKTIFHRAIVVTQSVDHSKSDHLKSRDAILTNVKEADILVESCFVCHKSDHSSKKCLDRPTRISAVNKEYDRFDFDLNFNSKN
Ga0272436_1000262161	F019584	N/A	LIQLNTLKEIHFYLIQLNNDQQFIQEIKNKEAMIKVKTIKQIIFVEESVKATRRIIEMKMTNQSKLRDAVLTNVKENDLLIENCFLCHKSDYTSKKCLNKSFRINALNDEFDHSLNFNSESDSKN
Ga0272436_1000262162	F104131	N/A	MFHFFKECFEASFFIVKDNNSFVEIITSSMIMKALKKQCKELKAKLQAKEIILSSSIYSEHSRFQKILDSSLFIDEKNSI
Ga0272436_1000262163	F007840	N/A	MINAIKRQNNTRKFIKSTAKLIELLNDLQLINYTSFISINKISDKESSLIARESNQSRESINFQIKQQK