Scaffold Ga0272436_1000261

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000261
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127722
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (55.36%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F021896	Metagenome	216	Y
F032102	Metagenome	180	Y
F032883	Metagenome	178	Y
F036036	Metagenome	170	Y
F055319	Metagenome	138	Y
F059497	Metagenome	133	Y
F084912	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100026110	F055319	AGCAG	MIEVRVKRLRLVDKMICIQIFECNLAQRLNFSYKQRNFFIYIDNITVVNVHDTQSEELLI
Ga0272436_100026113	F017767	N/A	MKDVLISSTTSMSDDSFASESLITECVLSNNEISYSLKSLIDIEAADYSFIDEVIAQIVC
Ga0272436_1000261164	F013598	N/A	MNFIIDLFNSYNYNAILTVICKLLKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272436_1000261166	F032883	GAG	MMKFSENFNIFSIISMTSFYFNKEFHSRISFDSDTTDYEITRERLKARKVDNIVIQMKELLIFNHQQCYEACRH
Ga0272436_100026119	F032102	N/A	MKIADLEKNNDQSIYKQILETNEIDENCTLLREAIARDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272436_10002612	F059497	GAG	MSIEDIDREIVYNTQCKLNILDIAFIDASAQNLEDIKVKLSSKYQNFLDVFDRAQVNKLSSHRLYDHKIKLTNNATSFRC
Ga0272436_100026120	F013598	N/A	MNFIIDLSDSYDYNAILTVICRLLKERHYISCIIDDEDTTVEKTVEMLLQ
Ga0272436_100026121	F036036	N/A	MLISLIHHLFSCFDQSFASENQCLIHVIEYIFDSSDLQSFASAFILDDVRVEAHTRMKVLVHEEESQEDD
Ga0272436_100026127	F021896	N/A	MMKNNLESEDFLKNVECNLTFLDLDKEYIFSDEMSERDSYSTIVINEFFIEVCKI
Ga0272436_10002614	F084912	N/A	MKMTDQSKSRDAVLINVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDHSLNFDSESDSKN
Ga0272436_10002617	F007840	N/A	MINAIKRQNNTKESIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINLQIKQQK
Ga0272436_10002619	F001951	N/A	MITMMKLKFIDILKNERERDEDTVKTTVTEMMIFELKKLLINAEMLLTLMNKTMMKMKRD