Scaffold Ga0272436_1000248

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000248
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129564
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (27.74%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F013598	Metagenome	269	Y
F024448	Metagenome	205	Y
F032883	Metagenome	178	Y
F036036	Metagenome	170	Y
F036504	Metagenome	169	Y
F037509	Metagenome	167	Y
F057010	Metagenome	136	N
F074202	Metagenome	119	Y
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100024811	F013598	N/A	MNFIINLFNSYNYNVISPVICRLLKERHYISCIIDDEDITVKKTAEMLLQ
Ga0272436_100024814	F074202	N/A	MKTVNCKMNCKIIYMSFLLMSSYLLCSNNAFNLALFLNDDFFLKLVISKLYLHVETELNFKEEIILRCSFFTAKDDDLNSSFNLETATNFIKFLXFIIFCNDXSFFFNLFLSIKYDVTQSKXANAENQTFKSEVVINFTIVNLAVVDLAVVNLAVLNNVNNESSLKFENLDCKDDMKRLTLSISSFFSSDIVN
Ga0272436_100024822	F037509	N/A	MILIFIFIQIHSTDNETSIKKFVYLMINNIKRQNNIKKLIESTRTYDCVIAREFIAQSVTSVQID
Ga0272436_100024831	F032883	N/A	MQNDXAKXLSMIEFSENFNIFSIILITLFYFNKNFHSRMSFNSDTIDYKTTCERLEARKANNIIIQMKELLIFDYQ
Ga0272436_10002485	F024448	N/A	MKDVLISLTISMSNDSFTSESLIIECILSSNEISYSLKSLIDIEAADYSFINEVIAQIVCDQLQIKFLTLIKAKSIQEFDDHYAKKFITHVIYSNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKINLVIDMQINSLRFSNFNSTIQKLIALFLSNKSITKQKSLTFTHILKRFFTFVTF
Ga0272436_100024868	F036504	N/A	MFRQDTQSAEQXVNQKEAHFQRESSTLSDNENDHHKFIKLLNSLIFIETNDSIXKTXNIKIADKLDVNANHYSTEKIHIVYVIFRLEDDADQQIYAKYRVDALSFYQLLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKSFSSFYSEFTRIFSFLNYDDIILMNDIQNKINNYLQNVLSVCLIKFSSLDKFKIFLQDVNNKQXVNYQLRDEQXTVKSITASKKCFVSSSTSVSTTNYVQFATFFILESEXSRMSIICFNCKVLNYLSKNCFQLKTSTSTSCAFISCLNEIIMSKEEKKLFTEKSKNETKN
Ga0272436_100024875	F036036	N/A	MFINLIHHLFSCFDQSFASENQCFIHVIEYIFDLSNLQTFANAFILDDVRVEAHMRIKVLVHEEES
Ga0272436_100024881	F000597	N/A	MKEMLISSMMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDKVIAQIVCDQLQIESLTLIKAKSIQEFDDHYVKRLIIHVIYLNLTV
Ga0272436_100024882	F005901	GAG	MNNKLQTNVNHFDNENICIVYVISRLEDDIAEHIFTXYHYDALHSYISIYELFEHLKEIYNELNRNXKCRCKYNALRLINKSFNVFYFNFMKLFSYFKYDDCTLMNDLQNKINNYLQNTLSICSENFTSLTHLRIFLQDVNNKQRVNYQLRSQLCTVIIKVTVISDKCAATSLSIMMTLIIEYVKSTLSSISESARSSIICYTCKTSNHLFKNCSQNKINTSASHAFISHLHEIVISKNKKNEKMSSFKDNEAKN
Ga0272436_100024890	F078020	N/A	MRFFFDCLINAXKDAAFTLNIEKFFFEAVEVNRXSTLRAELIKEFDDRDHFECEALIDIEKTEMRTFNXFKKTMTSFCISSSISFLFIQSFSNMMSXXFISAINIETVNFLXLSTVRLSRILXVMIFFVSFSSYSLINFSLASCMSXISSFXHI
Ga0272436_100024891	F057010	N/A	MSRFFKERFEASFFIVEDNDSFAEIITSSMTMIALKKRCKELKARLQAREIISSSSIYSEHSRFQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFSSERVKLSYVHFRLFNDAAEITQSRRERDCFNSYKIVDELLKELAQLFNDSDKEVNFHKDYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINSRLXFAXITQLIQLSTLKEIYFYLIQLNNDQRAIQEIKNREAMIKAXTTKQIIFAEESYKATRRIIEIKMIDQSKSRDAVLTSVKENNLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDHSLNFNSKFDSKN