Scaffold Ga0272436_1000228

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000228
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133479
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (9.15%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F008169	Metagenome	337	Y
F011463	Metagenome	290	Y
F028367	Metagenome	191	Y
F032884	Metagenome	178	Y
F036035	Metagenome	170	Y
F041516	Metagenome	159	Y
F051591	Metagenome	143	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000228119	F036035	N/A	MKDNAMQRKHHELKKASKNHKCNDNDHLNNTLNKHTESISDCDIIKELNERKKK
Ga0272436_1000228120	F094622	N/A	MSIRQHNLDMFALKQRVYLNDSNSKDDVTAIAMKMNXKLNKRLRESTLVITHHDELKELVAKMKHLANVAIANQECHEKIYKIYSDSQTFLKTVKVMILTKDQTHL
Ga0272436_1000228122	F051591	N/A	MLNVIALYLRYXSSRVISLRIVTTDLDLLSCTSRKDKTDSDLIRNAVLLXNNVVLCVIFKHKRVXFRFLCQYTVFCAVLKSIDDLFFSCEFALQFINQITVXIEDSFFCVDELSFRREFXSAXARKISIFDFXLAMQSSVKLLSRMRTCFDCTIVLYNLLINLIYHMLQ
Ga0272436_1000228127	F032884	GAG	MTIRNERVEREECKETKKNESTMTKVEKERLYMQTIDVIDQREDIKQRLXSDYM
Ga0272436_1000228129	F041516	N/A	MIQRVIHIHEIYNLSLRKHEIIHEKENLSNIEKTLHMLKESILVKDFNLHHFTXEESFYS
Ga0272436_10002283	F008169	AGG	LKNRRRLESXHDSSLFTDEKNSTXKNXYGKIQNKLEINVNLFFNEXVKLSYVHSKLFDDAAKITQAKCKRDCVNLYKIIEDLLKELAQLFNDLNKKVNFHKEYYNLIQESKKFSEFYIQFQRLSFYLDYHEKQLIVDLKDKIHSRLQFIXVDQLVQFDSLKEIYFYLIHLNNDQRVIQEIKNKIKHVNNVSKTIFHRVTVVTQQSFNHSKYDHLKSRDAILTNVKEVNILVESCFVCHKSDHSFKECFNQSTKINDVNNEYNRFDFDLNFNSKN
Ga0272436_10002284	F028367	N/A	LKENYFEKSFLIDAHLISQNSSFNLCSLINSDSIIYMIIHFNLVDKVCKKLEIQSISLTKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLIISMLIADIDYHEVILSKFXMNKNEILLNMQNNVIVFLNQLNTSISVFLISLNSKHSSXSRSTLFSSITQTKIFMMFKXLISITALKKSFLI
Ga0272436_100022857	F051591	N/A	MLDVIALYFRYQSSRVISLRIVTTDFDLLFCTLRKDKTDSDLIRNAVLLXNNVVLCVIFKHKRVXFRFLRQYTVFCAVLKLIDNLFFSCEFALQFINQITIXIDDSFFCVDELSFRRRFXPAXAXKISIFDFXLATQSSVKLLSRIRTCFDCTIMLYNLLIDLIYHMLX
Ga0272436_10002286	F011463	N/A	MRLCKDLKDKQLNLYQITAKVSIFYHLHLSVSMKHLHSMFSSKLLXSYSENFLSEQHSESFKLITIKDDEHXKIDDILNFRRYXDQIQYKVKXKDLNKDNEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272436_100022873	F005901	N/A	MIRFMQTYNNNAAEHNFAQCQHDALHSYILIDELFEHLKEIYNELNRNRKCRCEYNALRQADKSFNVFYFNFMKLFNYLKYNDHTLMNDLQNKMNNQLQNALSVCSKNFTSLTCLRIFLQDVNNKQRVNYQLRSQLCTVIIKVTVISDKHAATSLSVTTLIINYVKFIIFSIFKSDXAKSSIICYICKISRHLFKNCSQNKINTSASCAFTFHLHEIIISKNKENEKISSFKDNKTKN
Ga0272436_100022874	F000597	N/A	MLISSTISMSNDSFAFESLTIECVLSSNEISYSLKSLIDIKATDYSFIDEVIARIIYDQLQIESLTLIKAKSIREFDHHYAKKLITQVIYLNLTVQDHMIDIVFMLITXLDQH
Ga0272436_100022878	F076668	N/A	MTCLLLTSLFLACASACKTSKSLIHSTNHYAIKETSVFKSTTTIEKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIKRLQKISFSKXSSKDXLKRLCMIMLKXTCYNMIFAFNALSXVLFKKSLKTLXFSLXKVSALLFHIITLVVEFSLTFCFMQTSIXQQFMSNASSFKIKIXDLXRISXXILMSCFSRQTRKCLSSSVK
Ga0272436_100022879	F086375	N/A	MFILFVNSKSIASQNCGENWFNEIKEHYKXQNNDHVVIFKXLHKLRQFNVXKEVNEINKAAMKDNVKDEIKQEQKNKDIHDNASQ