Scaffold Ga0272436_1000216

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000216
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 136782
• Total Scaffold Genes: 162
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (53.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F013598	Metagenome	269	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000216103	F000597	N/A	MSDDSFASESLITECVLSSNEISYSLKSLIDIKVADYSFIDKVIAQIVCDQLQIEFLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHTIDTASMLII
Ga0272436_1000216107	F069514	GAG	MIKFVNNNALFSIIFLISFFLNKDFHSHMSFELDTIEYESFRECLQATKVENISEHMNKILTFACESLVKTRKQMI
Ga0272436_1000216108	F094626	GAG	MFLNERNIVTARSFKKLDDKMLDFFINLDLVDSSYKLKLSKTMHVHDVFHSDLLHFVINDFLSDQKNEFLESIMTNDEDE
Ga0272436_10002162	F001253	GAGG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLPLIKLKPIRKFDDHYAKKLITHAIYSNLTVQDHMKRSASMLITRLDQHQMILGKT
Ga0272436_100021690	F001253	GAG	VTFIKDVMKDVLISSTMSSLNDLFASKSLTTECVLFSNEISYSLKSLIDIEATDYSFIDELIAQNVCNHLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFASMLIT
Ga0272436_100021694	F000597	N/A	MSDDSFASESLITEYVLFSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDHTIDTAFMLIIRLDQHQMILEKT
Ga0272436_100021699	F013598	N/A	MNFIINLSDSYDYNAILTVICRLSKERHYISCIIDDEDITAEKTAKMLIQ