Scaffold Ga0272436_1000205

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000205
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142777
• Total Scaffold Genes: 180
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (50.56%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F017941	Metagenome	237	Y
F036036	Metagenome	170	Y
F041516	Metagenome	159	Y
F044227	Metagenome	154	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000205142	F094626	N/A	VRFFKKLNDKMLDSFQITEFIDSFYKLKLSETMCIHDVFHSKLLCSVVNDSLSDQKMNLRNQ
Ga0272436_1000205143	F036036	N/A	MLVSLIHYLFLCFDQSFASEDQCLIYVIEYIFNLSDLQTFANAFILDDVRVEAHTKVKALVHEEEN
Ga0272436_1000205145	F017941	N/A	MKIADLKKNNNQSIYKQILEINKIDENCTLLCEAIARDKTQYEDIKLKNC
Ga0272436_1000205149	F000597	N/A	MKDVLISSMMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIQEFDNHYAKRLITHVIYLNLTV
Ga0272436_1000205150	F003820	N/A	MKLFSYLEYNDCTLMNDLQNKINNHLQNALSICLKDFIILHRLKSFLQSVNNKQRVNYQLRSERCMIIVKVIIASEKRATSLSAVTTSIIKYVKSTIFSTSESVRSFIVCYICKISSHLSKNCSQNKINTFASQAFTLRLHEIVISKNKENEKMSSFKDSEAKN
Ga0272436_1000205157	F006206	N/A	LLQFQFEFRFKKLVIFSKVIKEIEIISLCKLNEILLKENYFEKSFLINAHLIFQNQSFNLHSSIDSDSIIYMIVHSNLVYKVCEKLKIQFISLTKEKLIKDYDEKIFKKIITHKILLNLIIKSYKKLTVLMLIVDIDHHKVILNKL
Ga0272436_1000205162	F044227	N/A	MQLQLKSSDDETCTYALLELIASAIKNATKRQLLKLSNNHCYHEEFQSSCKNNDENKASEAI
Ga0272436_1000205171	F001951	N/A	MIMTKLKFIDSSRNEKERDENTVETTVTKVIILKLKELLVDAKTLLTLMSETKKKMIK
Ga0272436_1000205175	F041516	N/A	MIQRVIHIHEAYNLSFKDHEIIHEKENLSDIEKTLHMLRESILVKEFNLHHFT
Ga0272436_1000205177	F003820	N/A	MKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLIRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTIVPDKRAATSLSVTTLIIDYVKPIFSSISESARSSIICYTCKTSSHLFKNCSQNKINTSASHVFILHLHEIIISKNKENEKMSSENSETKN
Ga0272436_1000205178	F000597	N/A	MKEMLISSMMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFDNHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT