Scaffold Ga0272436_1000186

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000186
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149126
• Total Scaffold Genes: 160
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (48.75%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F036994	Metagenome	168	Y
F037508	Metagenome	167	Y
F044226	Metagenome	154	Y
F061401	Metagenome	131	Y
F084912	Metagenome	111	N
F094626	Metagenome	105	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000186102	F036036	N/A	MLVSLIHHLLSCFDQSFASEDQCFIYVIEYIFDLSNLQTFASAFILDDVKVKAHMRVKVLVHEKENQEDD
Ga0272436_1000186103	F094626	N/A	MFLNERNIITVRFFKKLNDKMLDSFINLDFIDSSYKLKLSEFMHIHDVFHSDLLHFVVDDSLSDQKNESSRSIVIKDEDE
Ga0272436_1000186104	F036036	N/A	MLVNLIHHLLSCFDQSFASEDQYLIHVIKYIFNLSDLQTFVNAFILDDVRVEAHMRMKVLVHEEES
Ga0272436_1000186106	F013598	N/A	MNFIINLFDSYDYNVILTVICRLLKERHYIFCIIDDEDITVKKTAEMLLQ
Ga0272436_1000186109	F000597	GAG	MMKKMLISSTMSISDDFFASESLTIECVLSSNEISYSLKSLIDIKAADYLFIDEVIAQIVYDQLQIKSLTLIKAKSIQEFDDHYAKKLIIHVIYLNLTVQDHMIDTTSMLITQLNQH
Ga0272436_1000186112	F017941	N/A	MKIADLKKNNDQSIYKQILETNEIDKNCTLFREAIARNEA
Ga0272436_1000186115	F000597	N/A	MKEMLISSMISMLNDSFAFESLTIEYVLSNNEISYSLKSLIDIEAADYSFIDEVIAQIIYNQLQIEFLTLIKAKSIQEFDNHYVKKLITHVIYLNLTVQDHTIDTASMLITRLNQHQMILEKT
Ga0272436_1000186117	F084912	N/A	MKMTDQSKSHDAVLTNVKENDLLIENCFLCHKSDHTFKECLNKSFRINALDDEFDYSSSFNSESD
Ga0272436_1000186120	F104131	N/A	MSHLFKECFKASFFIVKDNNSFAEIITSSMTMKALKKRCKELKAKLQAREIILSSSIYSERSRFQRILDSSLFTDEKNSI
Ga0272436_1000186121	F007840	N/A	MINAIERQNNTRKSIESTAKLIELLDDLQLIKYASFISINRISNKESSLIARESNQSRESINSQIKQQK
Ga0272436_100018672	F036994	GAG	MNHRFDDVIEAGSLIDLLIEEIDFELVIVADSLVARERMIRFTDE
Ga0272436_100018674	F061401	N/A	LNNDQRVIREIKNKLKRVDDVSKTIFHKATVVTQSVNHSKSDHLKSRDAILTSVKEADILVESCFICHKSDHSSKKCLDRPTRISAVNKEYDRFDFNSNFDSKN
Ga0272436_100018678	F044226	GAG	MMKFSDNFNIFLITSMILFYFNKEFHLRMSFDSDTTDYKTTCERLEARKADDIVI
Ga0272436_100018679	F037508	N/A	VIFRLEDDADQQIYAKHRVNAFSLYQLLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKLFSSLYSEFTRIFSFLNYDDITLMNNIQNKINNRLQNALSVCLIEFSLLDKLKIFLQDVNNKQ
Ga0272436_100018680	F001253	GAGG	VTFIKDVMKDVLISSTMSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFNDHYAKKLITHAIYSNLTVQDYMKRFASMLITRLNQHQMILEKT
Ga0272436_100018684	F013598	N/A	MNFIIDLSDSYDYNAILTVICKLSKERHYISCITDDEDITAEKTAEMLIQ
Ga0272436_100018685	F032102	N/A	MKIADLKKNNDQSIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCQTQNEILYHDSQL
Ga0272436_100018689	F000597	N/A	MKDVLISSMTSMSDDSFASESLIIECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIREFDDHYAKKLIIHVIYLNLTVQDHTIDTASMLIIRLNQHQMIFEKT
Ga0272436_100018690	F003820	N/A	MKLFSYLEYDDHTLMNDLQNKINNRLQNALSVCSENFTLFTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKCAATSLSVTTLIINYVKSIFSSISESARSSIICYTCKISSHLFKNCFQNKIDISTFHAFISRLHEIVISKNKENEKMSSSKKNSKTKN
Ga0272436_100018695	F001253	GAGG	VTFIKDVMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKPIRGFDGHYAKKLIIHAIYSNLTVQDHMKRFASMLITRLDQHQMILEKT