Scaffold Ga0272436_1000185

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000185
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149352
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (41.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F019584	Metagenome	228	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100018517	F019584	GAG	LIQLSTLKEIRFYLIQLNNDQRAIQEIKNTEAMIKAQTTKQIIFIEESVKATRRIIEMKMTDQSQSHDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFDHSLNFDSEFDSKN
Ga0272436_10001853	F006206	N/A	LCKLDEILSKENYFEKLFLIDAHLISQKRSFSLCSLIDSDSVVYMIIHFNLVDKVCEKLKIQPISLTKEKLIRDYDEKISKKIITHKILLNLIIKSHKKLTVSMLIADIDHHEVILSKL
Ga0272436_10001854	F081945	N/A	MPSHLSTEERSEEFRNRFSYISDANSSKSRSAASFIHEDDESFAEKIILFVFYKI
Ga0272436_100018548	F001253	N/A	VTFIKDVMKDVLISLTMSSSNDFFTLKSLTIECILFSNEISYSLKSLIDIKAADYSFIDELIAQNVYDHLQIKSLSLIKLKSIRKFNDHYAKKLIIHAIYLNLTVQDHMKCFVFMLIT
Ga0272436_10001856	F005901	N/A	LINELFEHLKEIYNELNKNQKCCCKYNALKQADKSFNIFYFNFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQRVNYQLCSERCTVIVKVTIISDKCTTFLSVTTLIINYVKSTISFIFESVRLSIICYICKTFDHLFKNCSQNKINTFAFHAFILYLHEIIILKNKENEKISSFKDNEAKN
Ga0272436_10001857	F000597	N/A	MKDVLISSMISMSNDSFASESLTTEYVLSSNEINYSLKSLIDIEAADYLFIDEVITQIVYDQLQIKSLTLIKAKSIREFNDHYVKKFITHVIYLNLTV