Scaffold Ga0272436_1000164

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000164
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 158624
• Total Scaffold Genes: 180
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (15.56%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021896	Metagenome	216	Y
F028367	Metagenome	191	Y
F028667	Metagenome	190	Y
F032884	Metagenome	178	Y
F033265	Metagenome	177	Y
F037509	Metagenome	167	Y
F044226	Metagenome	154	Y
F051591	Metagenome	143	Y
F074204	Metagenome	119	Y
F086377	Metagenome	110	Y
F087978	Metagenome	109	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000164111	F087978	N/A	MFSSKLLRLYSEDSLSEQHSESLRSITIEDDEHXKIDDILNFRRYXDQIQYKVKXKDLDRDNEXYYVNKGKFDDSEKVLNEFHKLYSSKPR
Ga0272436_1000164112	F033265	N/A	MFSVIEKMMTSQSKKQSELCYETSINCMIYSVLLFQIETLNSYSSCERIFVSDYELLLVYSLLIILKLMIKQSESIKTLNANSEFTVITCRTIELNEYLXLSSVTMSIHSQSSQXFLSTSIKNFTLEXVSIQIQLTIKSLVNELKLEKQIILSFKXKSYXTLIVNNXKRLSXSLKLRSINIDEMSSTR
Ga0272436_1000164116	F028367	N/A	VKIISLCNLNEILLKENYFDKSFLVDAFLILQNKTFSLRSLINSDSVIYTIIHINLVDKVCKELKIQSILLTKEKLIKEYDERISKKTIIHKILLNLIIESHKKLTVSMLIADIDHHEVILEKSXMNKNEILLNMQIDIIIFLNQLNTFISIFLISLNSKHLS
Ga0272436_1000164120	F037509	N/A	MILISLLIQIHSTDNKTSIKKFVYLMINDIERQNNIKKSIKSMRTYNHVIARESIAQSIASVQINX
Ga0272436_1000164129	F044226	N/A	MQNNXAKXLSMIKFSENFNIFLIILMTLFYFNKNFHSRMSFDSNTTNYETIHEHLEARKANDIII
Ga0272436_1000164145	F000597	GAG	VTFIKNVMKDVLISSTMSSSNDLFASKSLTIEYILSSNEISYSLKSLIDIEAADYSFINEVITQIICDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTV
Ga0272436_1000164148	F037509	N/A	MILISILIQIHLTDNETSIKKFVYLMIDDIKRQNNIKKLIKSTKTYNCVIAREFIAQSVASVQID
Ga0272436_1000164162	F003820	N/A	MKLFSYLGYDDRTLMNDLQNKINNCLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKRAATSLSAVTTSIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKINISTSHAFTSRLHEIVISKNKENEKMSSFEDSEAKN
Ga0272436_100016455	F089602	N/A	MIEFHXNFIKKSNDLSEIIDIVFQTINQQEIFYQRIFFLLIEEIVVVSKAIYVLLQSFAK
Ga0272436_100016457	F009580	GAG	MICIQISEHNLAQRLNFFHEQQDFFIYIDDIIVVDVHNMQSEELFIXTFFNNFAXMLQFAIVTQLSLVTDFLNLRNNQNLILNNDNDEV
Ga0272436_100016463	F086377	N/A	MIQRFXNQRQRISIVDCDSIQILIVYAEAKFFFKFLDEKNKDNHLKVTDLNEIFAQIFIQITTKF
Ga0272436_100016465	F021896	N/A	MKNNLESEDFLKNVECNLTFLNSDKEYIFSDEMSERDNYFTIVINESFIKVREI
Ga0272436_100016469	F020121	N/A	MKKLIEHLHDEMLIVQIIYEFHVNLFHHSCSKYFVEDEVXLNVCNFSIVHLAVKLNYHNVDLFKIKHVFKNNSLIIELNLSIFMKIYSIFHVILLSHIANDFLSNQHQKFQKLIIIKNDKRFXYVNSILNFKHDKCYNSSLLKYYIDXENYFFTXKSFNLLNNCEQMLNKYHFINSVIEESHVLSCVMFQCQYQEL
Ga0272436_100016472	F028667	N/A	MTRDIESVESXTARLLRSTASRCIFIISFDVSAESQNVAISXNINISQQLRQXTIDQSDEIIKMLIELRDQXDMTLKLNKQXINVQVDHIKRLDELEINQMTIDTQEETIIELQEKVLSLKKKQRSVNQSRSRQSTESXASTKSLSRQSIENHTXCNLFTLFDNDHHKFFKFSNSSVFINEDKSTXDSXRIKMNDKLQANVDHFDNENICIVYMISKLEDDAAEHIFAQHXHDASHLYISINELFEHLKEIYDELNRNXKCRRKYNTLRQTDKSFNVFYFDFMKLFSYLDYDDCTLMNNLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTIIIKVTVVPDKCIATSLSAVMTLIIEYVKSTIFSISESVKSSIICYICKISDHLFKNCSQNKINISTFHAFTSHLHEIIISKNKENEKMSSFEDNEAKN
Ga0272436_100016479	F086377	N/A	MIQRFXDQRQKILILDCNSVQILIVHAEAKFFFKFLDEENKDNCLKVIDLNEIFAQILI
Ga0272436_100016481	F074204	N/A	MIVFCILRQAQFKVLALALIDNEVFVYVFMNKFFTQQHHLFLHQLTHSHRLQEFNDQVALIDDITHVIKITMILDEHIERLFFYVIELS
Ga0272436_100016482	F009580	AGCAG	MIEVRVKRLKLVDKMICIQISEHNLAQRLNFFHEQQDFFIYIDDIIIVDVHDMQSEELFIXAFFSNFAXMLQFAIVTQLSLVTDFLDLRNNQNLILNNDNDKV
Ga0272436_100016484	F089602	N/A	MIEFHXNFIKKSNDLSEIIDIVFQTVNQQEIFYQRIFFLLIKKIVVVSKVIHVLLQSFAK
Ga0272436_100016491	F051591	N/A	MLDAIALYFVYQSSHVISLRIVTTDLDLLFCTSRKDKTDSDLIRNAILLXNNVVLCAIFKCKRVQFRFLHQCTVFCAVLKSIDDLFFSCEFALRFINQITVXIDDSFFCVNELSFRRXFXPAXAXKFSIFNFXLATQSSVKLLSRMRACFDCMIVLCNLSIDLIYYMLQ
Ga0272436_100016496	F032884	N/A	MTIRNERVEREECEETKKNESTMTRVERERLYVQTIDLIDQRKDIKQRLXPDYM