 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030523 Open in IMG/M |
| Scaffold ID | Ga0272436_1000123 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 183217 |
| Total Scaffold Genes | 233 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 142 (60.94%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F048685 | Metagenome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272436_1000123219 | F048685 | N/A | MYRSDKQNIKIDVLTRRADFMSRDLNDERVQYQRTTILTLNRMKIADLKKNNDQSIYKQILETNEIDENCTLLREAIARDEAQCKDIKLKNC |
| Ga0272436_1000123223 | F000597 | N/A | MKDVLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDYYAKKLITHVIYSNLTVQDHTIDTTSMLITRLDQHQMILEKT |
| Ga0272436_1000123224 | F003820 | N/A | MKLFSYLDYDNCTLMNDLQNKINNRLQNTLSVCSENFTSLIRLRIFLQSVNNKQRANYQLRSERRTVIVKVTIISDKRAATSLSAVTTSIIEYVKSIIFSISESVRSSIVCYICKISDHLFKNCSQNKIDILTSHAFILRLHEIIISKNKENEKMSFENSEAKN |
| Ga0272436_1000123229 | F003820 | N/A | MKLFSYLDYDDCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKRAATSLSAVMTSIIEYVKSTIFSTSESVRSSIVCYICKISNHLFKNCSQNKINTSTSHAFISRLHEIVISKNKENEKMSSFEDSEAKN |
| Ga0272436_1000123230 | F000597 | N/A | MKDVLISSTTSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYSNLTVQDHTIDTASMLITRLDQHQMILKKT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |