Scaffold Ga0272436_1000097

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000097
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 204041
• Total Scaffold Genes: 222
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 105 (47.30%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F032884	Metagenome	178	Y
F037508	Metagenome	167	Y
F037509	Metagenome	167	Y
F089603	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100009710	F018839	N/A	MMIMKVVTFNHLTSDLYAAISIIAMFIESKDEAKLIKLNDFMILLNEDDFSLS
Ga0272436_100009713	F017941	N/A	MKIADLKKNINESIYKQILETNEIDENCTLLREVIARDETQYEDIKLKNC
Ga0272436_100009725	F032884	N/A	LNCDEKMTIRNKRVEREECEETKKNESMMMRIEKERLYVQTIDVIDQREDIKQRL
Ga0272436_100009727	F032884	N/A	LNCDEKMTIRNKRVEREECEETKKNESMMMRIEKERLYVQTIDVINQ
Ga0272436_100009730	F089603	N/A	LHYRKLERIIKKAKNIVMYIDALQIRKKIAEIKTETEMTVIFTHEFVRYSKVTSVYDKIITTEVKLQAISDAIAICSEKALKNSEI
Ga0272436_100009736	F089603	N/A	LHYRKLERIIKKAKNIVMYIDASQIRKKIAEIETETETTVICTHELIRYSKATSVYDKIITTKAKLQVTSDAIAICSEKALKNSEI
Ga0272436_100009744	F006206	N/A	VKVISLCHLNEILLKENYFDKSFLVNALLILQNESFSLRSLIDSDSIVYMIIHINLVNKVCKELKIQSISLTKKKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKS
Ga0272436_100009750	F008668	N/A	MISFYFNKEFYSRMSFDSDTTDYKTTYKRLEARKVDDIVVQMKELLIFNRQQLKKMKQIVEAQINKHRRDVIYEVND
Ga0272436_100009757	F017767	N/A	MKDVLISLMISMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQI
Ga0272436_100009761	F013598	N/A	MNFIINLSDSYDYNAILTVICRLLKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272436_100009768	F037509	N/A	MILISIFIQIHSTDNEMSIKKFVYLMINDIKRQNNIKKSIESMKTYNHVIARESIAQSVASVQIN
Ga0272436_10000978	F037508	N/A	MNHYSTEKIHIVYVIFRLKDDADQQIYAKHHVDTFSFYQSLSELLKHLKEIYEDQNLIQKYHHEYVTLKQLNKLFSSFYLEFTKIFSFLNYNDIILMNDIQNKINNHFQNVLLICLIKFSSLNKLKIFLQDVNNKQQVNYQLRDKQ
Ga0272436_10000979	F001253	N/A	VTFIKDVMKDVLISSTMSSSNDFFASKFLTIEYVLFSNEISYSLKSLIDIEAADYSFIDELIAQNVYNHLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFTSMLITRL