Scaffold Ga0272436_1000065

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000065
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 240687
• Total Scaffold Genes: 306
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 175 (57.19%)
• Novel Protein Genes: 21
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F037509	Metagenome	167	Y
F059497	Metagenome	133	Y
F061401	Metagenome	131	Y
F084912	Metagenome	111	N
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100006513	F008668	N/A	MSFNSDTTDYEMTCERLEARKTDDIVIQMKELLSFDHQQLKKTKLIIEIQINKHRRNVTYEVDD
Ga0272436_100006516	F006206	GAG	LCKLDEILLKENHFEKSFLIDAHLISQKQSFSLRSLIDSDSVIYMIIHFNLVDKVCKKLKIQSISLIKEKLIRDYNEKISKKIITHKILFNLIIESHKKLIILMLIADIDHHEVILSKL
Ga0272436_100006521	F013598	N/A	MNFIINLFDSSEYNAILTIICRLSKERHYISCITENEDITVEKTAEMLIQ
Ga0272436_100006522	F017941	N/A	MKIAHLKKNISELIYKQILETNEIDENCTLLREAIARDKTQYEDIKLKNC
Ga0272436_100006529	F019584	N/A	MIKAKTTKQIIFVEESVKATRRIIEMKMINQSKSRDTVLTNVKENDLLIENCFLCHKSDHTSKKCLNKSFRINTLDDKFDHSLNFNSESDSKN
Ga0272436_10000654	F061401	N/A	LNNNQRVIQEIKNKLKCIDDVSKTIFYKVIIVTQSVDHSKSDHLKLHDAILTSAKEADILVESCFVYHKSDHSSKECFDQSTRINAVNNEYDCFDFNSNFDSKN
Ga0272436_10000655	F006206	GAG	LCKLDEILSKENYFEKSFLINAHLISQNQSFNLRSLIDSDSVVYTIIHSNLVDKVCKKLEIQSISLTKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLIISMLIADIDYHEVILSKF
Ga0272436_100006550	F007840	N/A	MIDAIERQNNTRKSIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINSQIKQQKRLYLLLLSITLRSISFF
Ga0272436_100006551	F104131	N/A	MSRLFKEHFEASFFIVEDNNSFAEIITSSMTMKALKKRCEELKAKLQAREITSSSLIYFERSKFQKIFNSSLFTDEKNSI
Ga0272436_100006553	F084912	N/A	MTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDNEFDHSLNFNSESDSKN
Ga0272436_100006555	F059497	GAG	MSIEDIDRKIVYNTQCKLNVLDVAFINASAQNLEDIKVKLSSKYQTFLNVFDRAQVNKLSSHRSYDYKIELTNDVTSSRCRAY
Ga0272436_100006563	F013598	N/A	MNFIINLFDSSEYNAILTIICRLSKERHYISCITDDKDITAEKTAEMLIQ
Ga0272436_100006565	F036036	N/A	MLVSLIHYLFSCFDQSFASEDQCLIHVIEYIFDLSDLQTFASAFILDDVRIKAHTRVKVLVHEEENQEDD
Ga0272436_100006566	F013598	N/A	MNFIIDLSDSYDYNAILTVICRLSKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272436_100006567	F032102	N/A	MKIADLEKNISESIYKQILETNEIDENCTLLREAIARNEAQCKDIKLKNCRVQNDILYKDSQL
Ga0272436_100006571	F000597	N/A	MKEMLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIKAADYSFINEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT
Ga0272436_100006572	F003820	N/A	MKLFNYLDYDDCILMNDLQNKINNCLQNALSVCSENFTSLTCLRIFLQDANNKQRVNYQLCSQLRTVIIKVFVVLDKCIATSLSVTTSIIKYVKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKIDTSAFHVFIFRLHEIVISKNKKNEKMSSFEDSEAKN
Ga0272436_100006577	F000597	N/A	MKDVLISSTMSMSDDFFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTAFMLITRLNQHQMILEKT
Ga0272436_100006583	F084912	N/A	MIDQSKSRNAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFDLSLNFNSESDSKN
Ga0272436_100006584	F104131	N/A	MSHFFKKHFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKAKLQAKEITSSLSIYSERSRFQKILDSSLFIDEKNSI
Ga0272436_100006587	F037509	N/A	MILISILIQIHSTDNEMSIKKFVYLMIDDIERQNNIKKSIKSMRTYDHMIAREFIAQLVASVQIN