Scaffold Ga0272436_1000048

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000048
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 271004
• Total Scaffold Genes: 299
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (49.83%)
• Novel Protein Genes: 24
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Associated Families: 19

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F021216	Metagenome	219	Y
F028978	Metagenome	189	Y
F032884	Metagenome	178	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y
F048019	Metagenome	148	Y
F059497	Metagenome	133	Y
F061401	Metagenome	131	Y
F069514	Metagenome	123	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000048105	F001253	GAG	VTFIKDMMKDVLISLTTSSLNDFFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKPLSLIKLKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFASMLITRLDQHQMILEKT
Ga0272436_1000048115	F017941	N/A	MKIADLEKNIEKSIYKQILETNEIDKNCTLLREVVLKDEAQYKDTKLRDC
Ga0272436_1000048128	F069514	GAG	MIEFVNNNALFSVIFSIFFFLNKDFHSHMNFELDTIEYESSHERLQATKVENISEHMNKILTFACESLVKTRKQMIQQVNKHRKEIDYEVESKMFLNE
Ga0272436_1000048130	F028978	N/A	MKIADLKKKENDESIYQLILEANRINENCVLLREVVLKDEAQYKDTKLRNCRVQNEILYQSNLL
Ga0272436_1000048134	F000597	GAGG	VTFIKDVMKDVLISSTMSSSDDLFASKSLTTEFVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDYTIDITSILITRLDQHQMILEKT
Ga0272436_1000048136	F008668	GAG	MMKFSDNFNTFLTISMISFYFNKDFHSRMSFNSDTTDYKMTRQHIETRKIDDIVIQMSELLIFDHQQLKKIKQITEVQMNKHKRDVIYEVDDQV
Ga0272436_1000048137	F059497	GAG	MSIEDIDRKIVYNTQCKLNVLDVTFIDASTQNLEDIKVKLFLKYQNFLDVFDRAQVDKLSSHHSYDHKIKLTNDVTSSRCRAY
Ga0272436_1000048138	F019584	N/A	MIKAQTTKQIIFAEKSIKATCRIIEMKMTDQSKSRDAVLTSVKENDLLNENCFLCHKSDHTSKECLNRSFRINALNDEFDHSLNFNSESNSKN
Ga0272436_1000048141	F007840	N/A	MINAIERQNNTRRSIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNQSRESINFQIKQQKQLHLLLSSIALRSISFF
Ga0272436_1000048145	F032884	GAG	MTIRNERVEREECEETKKNESTMTRVERKRLYAQTIDVIDQREDIKQRL
Ga0272436_1000048151	F006206	GAG	LCKLDEILSKENYFEKLFLIDAHLISQKRSFNLHLLINSDLVVYMIIHFNLVDKVCEKLKIQSISLTKEKLIKDYDEKIFKKTITHKILFNLIIESHKKLIVSMLIVDIDHHEVILSKL
Ga0272436_1000048152	F061401	N/A	LNNDQRVIQEIKNKIKCIDNILKTIFHRATVVTQQSFNHLKSDHLKSREVILTNVKEADILVESCFVCHKSDHSSKKCLDQSTRINAVNKEYDCFDFDSNFNSKN
Ga0272436_1000048153	F081945	N/A	MSSRSSIEKRSEEFQNCFSQISDADSLKSRTKSSCAASFLHEDDESFAETIILLVFYEI
Ga0272436_1000048159	F017941	N/A	MKIADLKKNISESIYKQILETNEIDKNCTLLREAILKGEAQYKDTKLRDCRVQNEILY
Ga0272436_1000048164	F001253	GAGG	VTFIKDVMKDMLISSTMSSLNDFFASKSLTTEFVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDYMKRFVSMLITRLSQHQMILEKT
Ga0272436_1000048165	F037508	N/A	VIFRLEGDADQQIYAKHHVEALSFYQSLSELLKHLKEIYEDQNLIRKCHHKYVALKQLNKPFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIEFSSLNKLKIFIQDVNNKQ
Ga0272436_1000048173	F048019	N/A	MNEHIFKLFFAQAFAKVLQDEFTVYVLVMINVIKELIVEHQVKAMNNVTSCITNALKAQTLLIKLKEYEDVFLIESADKLSLHEDHDYAIEITAESSYESLYNLLNTELATLKQYLNDVLAKE
Ga0272436_1000048193	F003820	N/A	MKLFSYLDYDNCILMNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQNVNNKQRVNNQLRSERCTVTVTVIIKVTIVSDKCAATSLSAVTTLIIEYVKSTIFSISESVRSSIICYICKISNHLFKNCFQNKINTSTFHAFTLRLHEIIISKNKKNEKMSFENSEIKN
Ga0272436_1000048195	F021216	N/A	MKRKHHKLKKAFRNHERSDNNHLNDILNEHTESILSCDVIEESDERERK
Ga0272436_100004887	F000597	GAG	VTFIKDAMKKMLISSMISMSDDSFTSESLTIKYVLSSNEISYSLKSLINIEAADYSFINEVIAQIVCDQLQIEFLTLIKAKSIQEFDDHYVKKLITHVIYLNLTVQDHTIDTAFMLIIQLSQHQMILEKT
Ga0272436_100004890	F017941	N/A	MKIADLKKNISKSIYKHILETNEIDENCMLLRKAIARDEIQYKNIKLKNC
Ga0272436_100004891	F013598	N/A	MNFIIDLSDLYDYNVILTIICRLLKERHYISCIIDDEDITVKKTAEMLLQ
Ga0272436_100004893	F036036	N/A	MFISLIYHLLSCFDQSFASEDQCLIHVIKYIFNLSDLQTFANAFILDDVKVKAHMRIKALVHEEESQEDD
Ga0272436_100004897	F013598	N/A	MNFIINFFDLYDYNIILTVICKLLKERYYISCIINDENITVEKIAKMLI