Scaffold Ga0272436_1000040

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000040
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 289719
• Total Scaffold Genes: 334
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 173 (51.80%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F061401	Metagenome	131	Y
F069514	Metagenome	123	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000040209	F081945	N/A	MFSHSSTEKHSEEFQNHFSQIFDADLSKSSSAASFIHENDESFIETIISFMFYKI
Ga0272436_1000040213	F013598	N/A	MNFIIDLSDSYDYNAILTVICRLSKERHYISCIIDDEDITAEKTAEMLIQ
Ga0272436_1000040214	F032102	N/A	MKIADLKKNVSESIYKQVLDVNEIDENCTLLREAIERDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272436_1000040218	F001253	GAGG	VTFIKDVMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYSNLTVQDHMKRFVFMLIIRLSQHQMILEKT
Ga0272436_1000040224	F001253	N/A	VTFIKDMMKDVLISSTMNSLNDLFALKSLTIECVLFSNKISYSLKSLIDIEAADYSFINELITQNVYDHLQIESLSLIKLKSIRKFNDHYAKKLITHVIYSNLTVQDHMKRFVSMLIIRLSQHQMILEKT
Ga0272436_1000040230	F069514	GAG	MIEFINNNALFSIIFSISFFLNKDFHSCMSFEFDIIKYKSFHERLQMTKVKNIFEHMNKTLKFACKSLVKT
Ga0272436_1000040243	F036036	N/A	MLISLIHHLFSCFDQSFMSEDQCLVHLFRYILDSINLQAFVIAFILDDVRVKAHIRMKVLVHEEENQEDD
Ga0272436_1000040244	F013598	N/A	MNFIINLSDSYDYNAILTVICKLLKERHYISCITDDEDITAEKTAEMLIQ
Ga0272436_1000040245	F017941	N/A	MKIADLKKNNDQSIYKQVLDANEIDKNCMLLCEAIARDEVQYEDIKLKNC
Ga0272436_1000040250	F000597	N/A	MSDDSFASESLTIEYVLSSNEISYSLKSLINIEAADYSFIDEVTVQIVYDQLQIKFLTLIKAKSIQEFNDHYAKKLITHVIYLNLTVQDHMIDTASMLITRLDQH
Ga0272436_1000040255	F008668	N/A	MMKFSDNFNIFSITSMTLFYFNKEFHFRMSFNSDTTDYKTTHERLEARKADDIVIQMKELLSFDHQQLKKTKLIIEVQINKHR
Ga0272436_1000040261	F006206	GAG	LCKLDEILSKENYFEKLFLIDAHLISQKQSLSLRSLIDSDSVIYTIIHSHLVDKVCEKLKIQSISLIKEKLIKDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILSKL
Ga0272436_1000040262	F061401	N/A	LNNDQQVIREIKNKLKRVNDVSKTIFHKVTVVTQSVDHSKSDHLKSCDAILTSVKKADILVESCFICHKSDHSSKKCLNQSTKISAVNKEYDCFDFDSNFDSKN