Scaffold Ga0272436_1000032

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000032
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 325909
• Total Scaffold Genes: 400
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 240 (60.00%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F005901	Metagenome	386	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F021452	Metagenome	218	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y
F059497	Metagenome	133	Y
F079402	Metagenome	115	Y
F084912	Metagenome	111	N
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000032198	F005901	N/A	LIYELFEHLKEIYDELNKNRKCRCKYNALRQADKSFNVFYFDFMKLFSYLDYDNCTLMNDLQNKINNHLQNALSICSKNFTSLIHLRIFLQNVDNKQRVNYQLHSERCTIIVKVMIISDKCIATSLSAMITLIIEYVKSTIFSIFESVRSSIVCYICKISDHLFKNCFQNKINILTFHAFTLRLHEIIISKNKENEKMSSFSKNSKIKN
Ga0272436_1000032199	F000597	N/A	MKDVLISSTMSISDDSFDFESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVITQIVYDQLQIKSLTLIKAKSIQEFDDHYAKKLITHVIYSNLTVQDHMIDMTFMLITRLDQHQMILEKT
Ga0272436_1000032205	F032102	N/A	MKIADLKKNNDQSIYKQILETNKINENCTLLREAIARDKAQCEDIKLKNCQVQNEILYKDSQL
Ga0272436_1000032206	F013598	N/A	MNFIINLSDLYNYNTILTVICRLSKERHYIFCIIDDEDITVEKTAEMLLQ
Ga0272436_1000032207	F036036	N/A	MLVSLIHHLFLCFDQSFTSKDQCLIHVIEYIFNSSNLQSFANAFILDDVRVEAHMRMKILVHEEENQEDD
Ga0272436_1000032343	F008668	N/A	MISFYFNKDFHSRMNFNSDTTDYEMTRQRIKTRKIDDIVIQMSELLIFNHQQLKKIKQIIEAQMNKHRRDIIYEVNDQV
Ga0272436_1000032345	F059497	N/A	MLIEDIDRKIVYNTQCKLNILDIAFINASAQNLEDIKVKLSLKYQNFLDVFDQAQVDKLSFHCSYDHKIKLTNDVTSFKCRAY
Ga0272436_1000032348	F032102	N/A	MKIADLEKNVSESIYKQVLDANEIDKNCTLLREAIERDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272436_1000032352	F001253	GAG	VTFIKDAMKNVLISSTMSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFDDHYAKKLITHVIYLNLTVQDHMKRFVSMLITRLSQHQMILEKT
Ga0272436_1000032353	F037508	N/A	VNHYFTEKICIVYVIFRLEDDADQQIYAKHRVDAFSLYQSLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDDIILMNDIQNKINNRLQNALSVCLIKFSSLNKLKIFLQDVNNKQ
Ga0272436_1000032358	F007840	N/A	MIDSIERQNNTRKSIESTARLIELLDNLQLIKYASFISINRISDKESSLIARESNQSRESINLQIKQQK
Ga0272436_1000032369	F021452	N/A	MSDDSFDFKSFTVDVILNSLEKIFRFFALINTEVTDMIFIDESLMSELCKCFDIQSILLSKSKLIQLYDEISDRKSITHTLYTSIMIQEHKNEMMSLLITCLDQHKIIIENL
Ga0272436_1000032371	F079402	N/A	MQNKLKMNKNHFSIKEIKIAYVKSRVSETTIKHIALRMKDTITNSFLEAEKILSIINKMYDDLNRRHTTQRQFLKLYQNKIFFHEF
Ga0272436_1000032375	F084912	N/A	MKMTDQSQSRDAVLTSVKENDLLIENCFLCHKSDHTSKKCLNRSFRINTLDDEFDHSLNFNSESDSKN
Ga0272436_1000032377	F104131	N/A	MSRLFKERFEASFFIVEDNDSFAEIITSSMTMKDMIMKALKKRCEELKAKLQAREIISLSSIYFERSRSQKILDSSLFTDEKNSI