Scaffold Ga0272436_1000023

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000023
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 350223
• Total Scaffold Genes: 391
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 205 (52.43%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F032102	Metagenome	180	Y
F037508	Metagenome	167	Y
F041516	Metagenome	159	Y
F048019	Metagenome	148	Y
F059497	Metagenome	133	Y
F065269	Metagenome	127	Y
F079402	Metagenome	115	Y
F084912	Metagenome	111	N
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000023304	F007840	N/A	MINAIERQNNTREFIESTARLIELLDDLQLIKYTSFISINRISDKEPSLIARESNRSRESINSQIKQQK
Ga0272436_1000023307	F084912	N/A	MTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDKFDHSLNFDSESDSKN
Ga0272436_1000023309	F059497	GAG	MSIKDIDRKIVYNTQCELNVLDVAFIDASAQNLEDIKVKLSSKYQNFLDVFDRAQVNKLSPHRSYDHKIEFTNDVTSSRCRAY
Ga0272436_1000023314	F018839	N/A	VKVVTFNHLTSDLYAAVFIIAMFIESKYKAKLIELDDFMILLKKDDFSLS
Ga0272436_1000023320	F079402	N/A	MNKNHFSIEEIKIAYVKSRVSETMIKHIALRMRNTITNSFLEAEEILSIINKIYNDLNQRHTTQRQFLKLYQNKIFFHEF
Ga0272436_1000023321	F025887	N/A	MPDDSFDFKSFTVDVILSSLEKIFRSLALINTEVTDMTFIDESLMSELCERFDIQSISLSKSKSI
Ga0272436_1000023329	F018839	N/A	MMIAKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLIELDDFMILLNEDDFSLSRVTTEEINLFNI
Ga0272436_1000023332	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSLYQSLSELLKHLKEIYEDQNLIRKCHHEYVTLKQLNKFFSFFYSEFTRIFSFLNYDNIILMNNIQNKINNHFQNVLSVYLIEFSSLNKLKIFFQDVNNKQ
Ga0272436_1000023334	F017941	N/A	MKIADLEKNIDESIYKQILETNEIDENCMLLREAIARDEAEYKDTKLRNC
Ga0272436_1000023338	F000597	N/A	MKEMLISSMMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDHTIDTVSMLITRLDQHQMIFEKT
Ga0272436_1000023342	F032102	N/A	MKIADLKKNISESIYKQILETNENCTLLREAIARNEAQYEDIKLKNCRIQNEILYKDSQL
Ga0272436_1000023343	F013598	N/A	MNFIIDLFDSSEYNAILTIICRLSKKRHYISCITDDEDITIEKTAEMLIQ
Ga0272436_1000023346	F006206	N/A	VKIISLCNLDEILSKENYFDKLFLVDALLILQNKSFSLRSLIDSDSAVYMIIHINLVDRVCKELRIQFISLTKEKLIKKYDEKISKKTITHKILLNLIIESHKKLTVSMLIADINHYEVILEKS
Ga0272436_1000023353	F065269	N/A	MINVQSNLDQQFSTHTMIKSTELESESMSIAHYELQDAERKSLLSQNQTALEEENMNASLNTEEKNMNTLFFNHKMIKISINIELNA
Ga0272436_1000023356	F013598	N/A	MNFITDLFDSSEYNIILMIICRLSKKRHYISCIIDDENITVKKTAEMLIQ
Ga0272436_1000023358	F018839	N/A	MMIAKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLIELDDFIILLNEDDFSLS
Ga0272436_1000023383	F102179	N/A	MINNVEKTFVHNVSENTSTCSAMHVRSMLLRVMTLAMQEMHLDEVHFLRNKISQLESTTSKSTDVETLTYKDHNVAEKQLNSVAETVDCKQLISHAIVRVLIIHETTYNFSSKFVVELIKILQQEDEFAVRLKADKTKSI
Ga0272436_1000023386	F048019	N/A	VNEHVFELFFAQAFAKALQDESTVYALVIINVVKELIIEHQVKAMNNVTSCITNTFEAQTLLIELKEYEDVFSTENADKLSLHEDHDHAIEITAKSLYESLYNLLNTELAILK
Ga0272436_1000023388	F041516	N/A	MIQRIIHIHEAYNLSLRDHKIIHEKENISNIEKMLHMSRKSILVEDFNLHHFT