NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000021

Scaffold Ga0272436_1000021


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000021 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)366514
Total Scaffold Genes410 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)253 (61.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F008668Metagenome329Y
F018839Metagenome232Y
F037508Metagenome167Y
F059497Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100002113F059497N/AMSIKDIDREIVYNTQCKLNVLDVAFINASAQNLEDIKVKLFSKYQNFLDVFDLAQVDKLSSHSSYDHKIKFTNNVIFSKCQAY
Ga0272436_100002117F018839N/AMMIAKVVTFDHLTSDLCAAVSIIAMFIESKDEAKLTELDDFMILLNEDDFSLSRVTTEEIDLFSI
Ga0272436_100002118F001253GAGVTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFASMLIIRLDQHQMILEKT
Ga0272436_100002119F037508N/AVIFRLEDDADQQIYAKHRVDAFSLYQSLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKFFSSFYSEFTRIFSFLNYDDIILMNDIQNKINNRLQNALSVCLIKFSSLDKLKIFLQDVNNKQ
Ga0272436_10000218F008668N/AMSFNSNTTDYKTTCEQFEARKTNDIIIQMKELLSFDHQQLKKMKLIIEVQINKHKQNITYEVND
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