Scaffold Ga0272436_1000006

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000006
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 495045
• Total Scaffold Genes: 687
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 391 (56.91%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F032102	Metagenome	180	Y
F037508	Metagenome	167	Y
F044226	Metagenome	154	Y
F084912	Metagenome	111	N
F094626	Metagenome	105	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000006320	F044226	N/A	MMKFSDNFNTFSTILMISFYFNKDFHSRMSFNSDMTDYEMIYQRIETRKIDDIII
Ga0272436_1000006321	F000597	N/A	MKDVLISSMMSMSNDSFASESLIIECILSSNEISYSLKSLIDIEAADYSFINEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHMIDTASMLITRLNQHQMILEKT
Ga0272436_1000006326	F032102	N/A	MKIADLEKNNDQSIYKQILEINEIDENCMLLREAIARDETQYEDIKLKNCRTQNEILYHDSQL
Ga0272436_1000006327	F013598	N/A	MNFIINLSDLYDYNAILTVICKLSKERHYISCITDDEDITAEKTAEMLIQ
Ga0272436_1000006329	F094626	N/A	MFLNEQNIITAKSFKKLNDKMLNSFQITESVNSFYKLKLSKTMHIHDVFHSELLCSVVDDSLSDQKNESSRSIVINDEDE
Ga0272436_1000006335	F084912	N/A	MKMIDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFDHSLNFDSESDSKN
Ga0272436_1000006338	F007840	N/A	VINAIERQNNIRESIKSTARLIELLDNLQLIKYTSIISINRISDKESSLIARESNQSRELINSQIKQQK
Ga0272436_1000006341	F104131	N/A	MSRLFKERFKASFFIVEDNNSFAEIITSSMIMKALKKRCKELKARLQAREITSSSSIYSECSRFQKILDSSLFTDEKNFI
Ga0272436_1000006342	F084912	N/A	MKMIDQSKSHDVVLTSVKENDLLIENCFLCHKSDHTFKECLNRSFRINALNDEFDHSLNFDSESDSKN
Ga0272436_1000006350	F025887	N/A	MSDDSFDFKSFTVNVILSSLEKIFRFLALIDAEVINMTFIDESLMSELCERFDIQSISLSKSKLIQSYDEISD
Ga0272436_1000006363	F001253	GAG	VTFIKDVMKDMLISSTMSSSIDFFASKSLTIECVLSSNEISYSLKSLIDTEVADYSFIDKLIAQNVCDHLQIKSLSLIKLKSIRKFDDYYAKKLIIHAIYLNLTVQDHMKRFVSMLITRLDQHQMILEKT
Ga0272436_1000006378	F018839	N/A	MMIAKVVTFNHLTSDLYAAVSIIAMFIESKDEAKLIELDDFTILLNEDDFSLSQVMTEEINLFNI
Ga0272436_1000006380	F001253	N/A	MKDVLISSTMSSSNDLFALKSLTIECILSSNKISYSLKSLIDIEAADYSFIDELIAQNVYDHLQIKSLFLIKFKSIREFDDHYAKKLITHAIYSNLTVQDHMKHFVFMLIT
Ga0272436_1000006381	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYIALKQLNKLFSSFYSEFTKIFSFLNYDDIILMNDIQNKINNRFQNVLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLCDEQ