Scaffold Ga0307512_10007700

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10007700
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10612
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Onygenales → Ascosphaeraceae → Ascosphaera → Ascosphaera apis → Ascosphaera apis ARSEF 7405 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_100077003	F038958	N/A	MADIIASLFFEVHPFKAKLSLFRNGNYILIEPTVSAYSLWQMLLRVVADDRTGSSRNALYDCHRSRFDIAFHGMCAETNPNIR
Ga0307512_100077004	F004778	AGGA	VFSAYRRPFSRITTDNASSNYSMTSELQSTLGASGIEWPALRNHIPCMARVIQPALHAFTISLGVKGCTKSWEAHGHDQQFGENESMDVGKSHRLRKEGNARINKVSAMRPGLTKIIEKVRIS
Ga0307512_100077005	F026456	N/A	LAKKKTQWKEDLFFALKLARQKLSKYYAEVTPVKCMLLISAHILDPFWKLRSFRKWDKRMDIDPEDETSYTTLYQEDLLK