Scaffold Ga0307512_10006892

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10006892
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11373
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F047400	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000689211	F004891	GGTGG	MITRASGFGMGVSRFSRPLRGVGLLAMMDAELDTMQHVGSVCIVPLGAGVLQLLVPAVVVGVIIDGRCVADGVEVTR
Ga0307512_1000689212	F010438	GGAG	MWNRRPFRSASYLEMVSYAMRRVAKALAEGPHWQIIEKYWNTAMQQNNIWSIAFEARTKEILKEVC
Ga0307512_1000689213	F006048	AGGAG	MLKQRPTLDITRSNQYQVRAQVDKVKSHFIQSARDNAAELYDLQCFESAAEHLEFIDSLLADNMYHFPVAERVEGGVRGPNRTQRESKAANEWQASTLLPGGRYLALYLHQILSSGE
Ga0307512_1000689214	F047400	GGA	MYTCVLLPLQERMAQRGAGKHDQWRGYTTVLVVNQGIIKFISILTSVIRPMIEFDVDKAQDTFRQEVKWMLAIR