Scaffold Ga0307512_10005169

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10005169
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13763
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008531	Metagenome	332	Y
F019765	Metagenome	227	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000516910	F089625	N/A	MTPLGFATGLSLNQAESQLVQSNHDANNYGRLQMMNGQYIKISVNGVSTIRGLVSSVIHQ
Ga0307512_100051692	F019765	GAG	MLQLMDNMEVSWVFYVKVSTLTHLEKSKTALSTANKSGIMTLTVQHDMIVSVSFM
Ga0307512_100051697	F008531	AGGA	MAHVIQLALGAFMSSLGVKGHTKSWEAHERNQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGLPKIIDKGRIS