NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10003574

Scaffold Ga0307512_10003574


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10003574 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17863
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F047400Metagenome149Y
F051592Metagenome143Y
F081959Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000357410F081959GGAMSTGRRARMATMRMRTKKHRKPMMDLPRMWRTEGIVLESVKIGQYISDM
Ga0307512_1000357412F047400GGAMNTFVLLPLQESMAQRGAGKYVQWRGYMTVLVVNHGIIKSIIILTAVIRRMIKFDVDKLPYCFRQAVKWTLDIR
Ga0307512_1000357413F006048N/AMLDIIRSNRYQVRAQVDQVKSHSIQSVRENIAELYDIHRFESTAERLEFIDSLLADNKYLFPIAERVEGGVRGPNPTQRESKAANECLASTLLPGGSNTAVYLHQILSSGESPR
Ga0307512_1000357414F004891GGAMIARASRFVMGVGRFSVALRGVGVLAMLDAGLDTTRRVESVCVSPLGAGVLRLHVPGVAVGVFIDRRCVADGVQVTR
Ga0307512_1000357420F051592N/AVCLDEVENPLLEVVKHADLHCMEEIRLREIAHHKGNMSQHVESSVNMARREFGIRCLGVGIAERFT

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