NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10003142

Scaffold Ga0307512_10003142


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10003142 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19642
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016905Metagenome / Metatranscriptome243Y
F086388Metagenome / Metatranscriptome110Y
F089625Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000314216F086388N/AMETGDKIVERLEMAAVKEGNRTLAANDIDWGFSQIDCLCVWHVVNIYLVILNCCHRVVVSRLGHLVEPYSLSSVEILSSTSSVEQRQW
Ga0307512_1000314224F089625GAGMITPLGFATGPSHNQAEKQSMKSNQDEYNYRWQQMLNGQYDRISVNGASTICGLVSTVIHQRLGRCYA
Ga0307512_100031429F016905N/AMPGHRYTQAEYALQQVVELFGNLLFSLDEHNLTHTYQVVFRFVQLESLDFLVLRYLNTGLLPFEEFSEDLFFDEEV

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