Scaffold Ga0307512_10002748

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10002748
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21520
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_100027483	F081959	GGA	MSTGMSGRMATMRMRMRRNKHHKPMMDQCRMWRTKVTVLESVKIRLYISDV
Ga0307512_100027485	F006048	N/A	MHKGDLERGMLKQRPRLDITRSNGYQVRAQVDKVKSHSIQSARDNIAELYDLHHFESDAERLEFIDSLLADNMYLFPLAEHVEGGVRGPNPMQRVSKAANKWPAFTLLPDGSNPGVYLHQILSSDE
Ga0307512_100027486	F010438	GGAG	MLNRRLFMSANNLETVSYATQCVAKTLAEAPHWEIIETYWNTAMQQNNIWSIAFEACTKGILKEVC