NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10002674

Scaffold Ga0307512_10002674


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10002674 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21944
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F060560Metagenome132Y
F086388Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000267411F086388N/AMETGDKTVERLEMAAVREGNRTLAADDIDWCGSQIDSLCEWHVMNYYPVIPNCRHRVVASQIGHQVEPYSLSLVEIL
Ga0307512_100026743F004891GGAMIARASGFWMGVGMFSRSLRGVGVLAMPHAGLDTTRRIESVCMVPLGAGVLRLLISGVAVGVIINRRCVVDGVEATRWVISATRELFSEDEGVEF
Ga0307512_100026744F010438GGAGMWNRRPFMSASDLETVSYAARRVAKALAEGPHWQIIETYRNTAMQQNNIWSIAFEARTKEILKEIC
Ga0307512_100026745F006048AGGAGMLIQCPTVDITRSNRYQVRAQVDKVKSHFIQSVRDNIAKLYDLYRFESATECLEFIDPLLADNKYLFPVAERVEGGVCGPNPTQRESKADNEWLASTLLPGRGNPEVYLHRILSSGE
Ga0307512_100026746F060560GGAMINDNDGHIPLPLIMFTCTALHHALLEWQKNKGVHPKASKSKLKANRPDRSNYFNHKNDGGKITSCCAVMGHKLLTSPGVADTHTFLMNTWNTLPESYQQRVYNNTLATVKRQIQQAENPTPAMVISVEAACVDNAILLDYLASEVALEEPEIGSTDPNIPIDNNCTDDELDFGMPGGSG
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