NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307512_10002431

Scaffold Ga0307512_10002431


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10002431 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23623
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (68.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F051592Metagenome143Y
F060560Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000243115F051592N/AVRLHEVENPLLELVKHADLHCMEVVRLREVAHNTGNMLKLDASLVNMARREFGIGCLSVGIAEHSIQV
Ga0307512_100024315F060560GGAGMNKGVHPKAFMSKLKADRPDHSNYFNYKNDGGKNAPCCAATGRKLLTSTGVADMYTFVMNTWNTLPVTYQQTVYKNTLATVKCQIHHAENTKPAEVISVEAAHVNNHILVDYFTPKVALEEPQIESTDPNSPIDTNCTDDEL
Ga0307512_100024318F004891GGAMGVGRVSGPQRGVGVLAMPDAGLDTTQHVGSVCEVPPGAGVVRLLVPSVVVGVFIDRHCVADGVEASQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.