Scaffold Ga0307512_10002385

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10002385
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23912
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (51.72%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F060560	Metagenome	132	Y
F081959	Metagenome	113	Y
F088003	Metagenome / Metatranscriptome	109	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_100023851	F060560	N/A	VGEAISRFLYIKFHHRANTRGKYTDGFYNSIRDNKDGHIPSPLIIFTCTALRHALLEWQKNKGVHPKASQSKLNEDRPDGSNYFNCKNESGKIASCSAETGRRLLTTPGIADTYTFFTNTWNTLLESYQHRIYNNSLATVESQIQQAENPTPAVVFSVEAAPVDNGFLLDYLTSEVALQEPESASTLPNIPIDNNCKNEELHFGMPGGSGDIDDEGDETM
Ga0307512_1000238514	F006048	N/A	MLNHRPTVDIICSNRYLVRAQVNKVKWLLIQSVRDNIAELYDLHRIESARERLHFIDSILADNKYLFLVAERVEGGVRGPNPMQGESKADNEWPASTSLPVGGNSAVYLEQILSSGE
Ga0307512_1000238515	F060560	GGA	MINNRDGHTPLRQIMFRCTALRHAPLEWQKNKGVHPNASRSKLKAGRPDRSNNFTNKNDGGKIASCCAVTGRKLLTSPGIADTDPILMNTWNTLLESYQQRVYNNRLATVKRQIQQAENATPAVVIRVEAALVDKAIFLDSLASKVALNEPEVGSSDPNIPIDNHFTDDELPLGMPGGSGDNEDECDESDDRDALPTASWR
Ga0307512_1000238519	F081959	GGAGG	MIPMRMRRKKHRKSMMDQRRIWRTEGIVLDSVKIGLYISDL
Ga0307512_1000238522	F088003	N/A	MASLHTLREIEHHDVVSPGMFTDEFPDKHPQEWMKHVLITLEEAMDAYIVEVTVEFHC
Ga0307512_1000238526	F089625	N/A	MTPLGFATGLSLNQSGSQPVQSNQDENNYRRQQMMNGQYITMSVNGASTICGLVSTVIHQ
Ga0307512_100023855	F008531	N/A	MTLELQTTILASGIEWPALRNRIPCLAHVIHQSLGAFMNSLGVKGHTKSWEAHECDQQFGENESTDIGNSERLGKEGNARINKASDMRPGLAKIIDKVRIST