Scaffold Ga0307512_10002354

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10002354
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24235
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (60.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010438	Metagenome	303	Y
F046111	Metagenome / Metatranscriptome	151	Y
F047400	Metagenome	149	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000235411	F081959	GGA	MSTGMDASMATTQMRMRRNMHCKSIMDQRRMWRTKGTVLDSVKIRLYISDE
Ga0307512_1000235413	F047400	GGAG	MNTFVLLPLQESIAERSAGKHDQWRGYITVLVVNHGIIESISILPAVIWPMIYFDVDKPGDCFLQEVKRTLGIG
Ga0307512_100023542	F046111	N/A	MDVSFLQHVVIRTKLGVIMGFQIIQIAEQAAFSELMIVTVAIEIVQPHRDLERYTIGLGTCTVGIQ
Ga0307512_1000235429	F010438	AGGA	VFATSILLELYIWNERPFMGTSNLETVSDATRRVSKASAHAPHWKIIVTYWNTAMQQNTIWSIAFEGRTKGILKEVC
Ga0307512_1000235430	F047400	AGAAG	MNILVRLPLQESRVQRSARNHDQCPGYMTVLVDIHRMIKSISILTAVICPKIELDVDKLLDCFGQEVKLTLAIR