NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10002029

Scaffold Ga0307512_10002029


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10002029 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26745
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (61.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F008531Metagenome332Y
F060560Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_100020292F008531N/AMTRELQSTLEASAIRWPAVRNHIPCTAHVIRLALGAFVSSLGVKGHTKSLDAHECNQHFGENESVDSGKCQRLRKKGNARINKVSAMTPGLAKIIEKVCIS
Ga0307512_100020296F060560GGAMIDDKDGHIPSPLIMFTCTVLCHALLEWQKNKGVHPKASKSKQKADRPDRSNYFNYNPDGGKNPSQCAATGRKLLTSPGVADTYAFLMNTWNTLPESYQQRVYNNTHATVKRQIQQAENPTPAVVISVEAARVDNAILLEYLTSEVAPEEPEIGSTDPNIP
Ga0307512_100020297F006048AGGAGMLKQRPTLDITHSNWYQVCAQVDKVKSHSIQSARDNIAELYDLHRFESNAEHLEFIDSLLADNKYLFPVEECVEGGLCGPNRTQRESKAANKWPASTLLPGGSNPAVYLHKILSSGE
Ga0307512_100020298F004891GGAMIARASGLGLGVGRFSSPLRGVGVLAKPDAGLDTTRRVESICEVPLGVNVLRLVVPGVAVGVIIDRHCAVHVVISAT

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