Scaffold Ga0307512_10001917

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10001917
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27790
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008227	Metagenome	336	Y
F019765	Metagenome	227	Y
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000191719	F008227	N/A	MDSQRPPPGESGSNTSRLVGATSYTEILGTQRQRRHKLVHRDAADAATKHMTQDAHLKIVRKTGSRINKKQHVVGYEYIHINPISGQLTV
Ga0307512_1000191720	F019765	GAG	MLQVMDNMEASCVFYVKVGMFTHLEQSKIILLTVKKSGILTITVQHDLIVSVIFM
Ga0307512_1000191724	F038958	N/A	MTDVMATLFVDVHLAKAKLTLFHIGNCFSIASTGSAYSLPQMLLRVVVDSRTWLLRNELYDHRSSSFDIAFHGICAETNPNMR
Ga0307512_1000191729	F026456	N/A	MMKRHTVTLHHVITLYKIMFDHMYGVTRPLGKKKTQRTEDMFFAVNISQQKLSKYYAEVTQTTRMIVISAPILDPFRKLRSFRKWGKGMDIDPEDEKSYTSQYQ