NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307512_10001624

Scaffold Ga0307512_10001624


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10001624 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31169
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (38.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F016905Metagenome / Metatranscriptome243Y
F026456Metagenome197Y
F079540Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_100016241F016905N/AMPGHRYTQSEYALQQVVELFGNLLYSLEEQRLTHTFRVVYRFCELENIDYLVLRYLRTGLLPFEEFSED
Ga0307512_1000162424F008227N/AMDTQPPLPGESGSKSSQWVGATSNTSLIGTQQDRRHQVVHRDAAIAATNHMTQDAHLQIVCKTGSSKNQTQHAVXCEDIHIEVHSCLLTV
Ga0307512_1000162430F026456GGAMXALAKKKIQWKEDLFFTVKLARQKLSKYYAEVAPSTGMLLISAHIVDSFRRLRSFRKRHEGMDINPEDKTSYTTQYQEASLKYVENQ
Ga0307512_1000162434F079540N/AVCRXFKSTSLRNASVDFRIPNFGQLFHAQIEEEWGHKISGLVLRYDNNVLLGSIFIKLLNGLLYYHQPFHCPTSVEHLGLDCKVEYTNANKGIMPESLNIWVQYTESNLDNTFQGQVSSFLVLYFHWTPPNQNFQFQESLPARKTISTFSESWKKTHQWILHPQAQEYTVVIPTKFTDPHGSADCFDKFIQVVKQADRMHIVPVGAIVGLAHLGXENVPSDRIDSVWLVNNHVDLDTYXTVNQLQYLNQGVQEEDSLSNCTIXYRHYNNYLQRVWLQVRGAPEYS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.