Scaffold Ga0307512_10001455

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10001455
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33517
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000145521	F060560	GGA	MIDDMDSHTPSPLIMFTCTALRHALLEWQKNKGVHPKASRSKLKADRPDRSNNFNSNNDTGKNASCCAATGCQLFTSPGVADTYIFLMNTWNTLPESYQHRVYNNTPATVKYQFQQAENPTPAVVISVDAGRVDNSIHLDYLASKVVLEEPEIASTDPNMRITNNCMHDELHFGMPGGSRDYEDEGDECDGRDAIPTPNH
Ga0307512_1000145522	F006048	AGGAG	MLKQWPTLDITRSNRYQVHAQVDTVKSHIFRSARDNIGELYDLHRFESATEHLELIDSLQADNKYLFPVAERVEDGGRGPNPTQIVSKAANEWPASTLLPGASNPRVYLHQILSSGK