Scaffold Ga0307512_10001383

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10001383
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34456
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F010438	Metagenome	303	Y
F059517	Metagenome	133	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000138315	F006048	GGA	MLKQRPTLEITHLNLYHVRAQVDKVKSHFIQSATDYIAELYDLHRFESATDHLEFIDSLLADNKYLFPVAERVEGGVRGPNPTQRESKAANEWPASTLLPGGSNPGVYLHQIQSSSELPQ
Ga0307512_1000138316	F010438	GGAG	MWNRQPFMSASDLEMVSYATRRVAKALAEGPHWQIIEKYWNTTMQQNNIWSIAFEARTKGILKEVC
Ga0307512_1000138317	F004891	GAGG	MEVGRFSRPLRGVGVLAMTDAGLHTTRRVESVCIVPLEAGVLRLLVPSVAVGVIIDRCCVADGVEVTR
Ga0307512_1000138330	F004891	GGA	MITRASGLGIGVGRFLRPLRGVRVLAMPDVGLDTTRRVGSVGEVPPGAGVLRLLVPGVAVGVLIDRRCVMGGLGATC
Ga0307512_1000138331	F059517	AGGAG	MLQQQPTLDITGSNRDQVRAQADQVKSHCIQSARDNIAEPYDLHRFESAAERLEFIDSLVADNKYLFPVAECVEGGVRGPNPTQRESKAANERPVST
Ga0307512_1000138332	F060560	GGA	MIDNKDGQIPLPPITITCIALRHALVEWQMNKGVHSKASKSQLKADKPDRSNYFNYKNDGGENTSCCAATGHKLLTSPGIADTYTFLMNTWNTLPESYQQRVYKNTLATVKRQIQQAENPTPAEVISLEAVRVGNAILLDYLTSEVALKEPEIGSTDPNIPIDNYCTDDELHFGMPGGRGDYEDEGDESDECDAIPTASR
Ga0307512_100013835	F008227	N/A	MDTLPPPPGESGSNTSRLGGATSNTEILGTQQERRHKFVPRDAADAATNHMTQDAHLKIIHETGSREHKKQHVVGCECIHIEAIGGQLTV