Scaffold Ga0307512_10001165

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10001165
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38257
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (43.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Pyronemataceae → Sphaerosporella → Sphaerosporella brunnea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F016905	Metagenome / Metatranscriptome	243	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000116513	F016905	N/A	MPGHQYTQAEFALQKVVKSFGNLLSELAEHRVTHTYAVVFRFCQYENIDYLVLRYLNTGALPFEEFSEEWLFDGET
Ga0307512_1000116520	F004891	GGA	MIVRASRLGMRVGRFSRRLRGVGVPATPDAGLDTMLRIEATCKVPPGVGVLPLLVDGVAVGVFIDCHSVADGLDDTH
Ga0307512_1000116548	F080709	N/A	MVELTTRKREIRGDGGNHHEKLGLKRISCASQLTIPDTADTSPDPARYNTDTRSSEPNQASHTRDFS