Scaffold Ga0307512_10001115

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10001115
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39023
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (53.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F016905	Metagenome / Metatranscriptome	243	Y
F038958	Metagenome	164	Y
F063295	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000111528	F038958	N/A	MTDVMASLYVDVHPSTAKQNLFRDSNSFLIASTVSAYFLRQMLLCVLADSMTWLSRNDPYDRRSSRFDIAFHGISAETNPNMR
Ga0307512_1000111529	F004778	N/A	VLDQFELTDGRLLGSITTHDASSNFSMACKLQSTLEASRIEWPAIRNRIPCMVHAIQLTLGAFMSSLGVKGRTKSWEAHVHDQRFGENESIDIEKCPRLREEGNARINKVSAMKPGLVKIIEKVCIS
Ga0307512_1000111535	F016905	GAG	MPGHHYTPAEYALHQKVESFARLLFELDEHRLTRISAVVWLFCQSEGIDYLVLRYLNTGLQPYEEYSEEWLFDEET
Ga0307512_100011157	F063295	AGGAGG	MLNGRLPWQLQRLFKIKLLNDDRAFVEYWLALALTTMPENSGNLDPVWKFVQARKAPAAVALQVFSVGNVVGRAHVIPEIATSSKIGDGRNEQWIVNSHIHLATCNDVDN