Scaffold Ga0307512

Basic Information
Taxon OID	3300030522 Open in IMG/M
Scaffold ID	Ga0307512_10001033 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40798
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (68.42%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

40798

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (68.42%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.6996	Long. (^o)	-121.669	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.6996

Long. (^o)

-121.669

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F038958	Metagenome	164	Y
F046111	Metagenome / Metatranscriptome	151	Y
F062316	Metagenome	130	Y
F080709	Metagenome / Metatranscriptome	114	Y
F088003	Metagenome / Metatranscriptome	109	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000103310	F038958	N/A	MTDVIANLFVEVHPSKAKITLFVDGNCFLVASTVSVYSLRKILLRVLADGNTNSLRNALYDRRSSRVDIAFHGICAETKPNMRYRFQVSWCNSAV
Ga0307512_1000103315	F088003	AGG	MVREIEHHDVVSSGIFADEFRDKGPQEWTKQALKSLEEATESYMVDVIAEATNFL
Ga0307512_1000103321	F080709	GGA	MERDDLTSCSYVMVELSTTNREIRGDWGNHHEKLGLETISCAIQLTIPDTAGMSPNLAGNITDTGSSSPNQACRTPDFS
Ga0307512_1000103326	F092994	N/A	MDLSASRRRFAAEVRANRFVGGMCLYCGGFNPRAAECGAKRKTQTFKAAGMEVKEVGTKEGSEESGKG
Ga0307512_1000103329	F062316	GGA	VFVPEPLNAFESIETILTATFEEEPLKAYFWEPSDLPSPWNLYWTEVAREGGSLDIHDPVFGPHWTDCRGLHWGLLTNCDSEEICDCEGHNWVGAQSTIWHAAAAATTAKSLGIPLMVIVPPSPTSSEIDAHSWHW
Ga0307512_1000103346	F004891	N/A	MIMQDPGLGMGVGRISRLLRGVGALAMPDVGLGTMQRVESVCVIPLGAGVLRLLLPGVAVGVFIDRCYVADGVDIRH
Ga0307512_1000103357	F046111	N/A	MDVSSLEHVVIRAKLGDIIGLQIIQIAVRKVYFQLTIIALAIEMVPTYRDLERYTSGLGTCIVGTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307512_10001033

Overview

Ecosystem & Geography

Associated Families

Sequences