NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000963

Scaffold Ga0307512_10000963


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000963 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42377
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (67.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F016905Metagenome / Metatranscriptome243Y
F047400Metagenome149Y
F059517Metagenome133Y
F080709Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000096310F004891GGTGGMIVRASGLGMGVGRFSSPLRGVGVLAMPDAGLETTQRVESVCEVPLGAGVLRLLELGMAVGVILDRRCVADGVISATRELFSEDGRVEF
Ga0307512_1000096334F016905GGAMPGDRVTPSEYALQQVVEHFGNLLFSLEEHHLTHTYRVVLRFCKLENINYLVLRYLNSGALPFNEYSEEWLFDGEV
Ga0307512_1000096341F080709N/AMVELSTRKSEIRRDGGNHHQKLGLERISGASQLTIPDTAGTSPDPAGNITDTGSSTPNQASCTPDFSSPLVFSILF
Ga0307512_100009638F047400AGGAGMAQRGAGKHDQWRGYMTILVVNHGMKKSISILTTVIRPMMKFDVDEPRDRFRQEVKWTLAIC
Ga0307512_100009639F059517N/AMHKRDPEREMLKQRPTLDSTRSYRYQVRAQVDMVKSHFIQAPRDTIAELYDLHRFESNAEHLDFIDSHLADNKNLFPLAERVEGGVCSPNPTQSVESC
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