Scaffold Ga0307512

Basic Information
Taxon OID	3300030522 Open in IMG/M
Scaffold ID	Ga0307512_10000910 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43495
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (50.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

43495

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (50.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.6996	Long. (^o)	-121.669	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.6996

Long. (^o)

-121.669

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F019765	Metagenome	227	Y
F038958	Metagenome	164	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000091014	F019765	GAG	MQVMDNMEVSCVFYVKVSTFTHLERSKIALLSVNDTSIMTLTVQHDMLVSVSFM
Ga0307512_1000091015	F008227	N/A	MDTQPPPLCESGANTCRLVGATSNTERLGTQQESRQKSVHRDAANVATKHMTQDAHLKIVRKTGSSQKKKQHAVGCEYILIVANGGQLTV
Ga0307512_1000091023	F008531	GAGG	MSSLGVKGCTKSWEAHERDQQFGENASMDIGKSQRIRQESNARINKVSAMKPGLAKIIEKVCIS
Ga0307512_1000091029	F019765	GAG	MLQVIDNMEASCVFFVKVGTFTHIQKSNISLLTVNNSGIVTLTVQHNMIVSVIFMQYP
Ga0307512_1000091030	F008227	AGTAG	MDTQPPPPGESGSNTGRLAGATSNTDLLGTQQECRHKLVYRDDANAATKHMTHDAHLKIIRKTGSRNNKTQHAVGCENIHIEVKGSQLTE
Ga0307512_1000091031	F088003	N/A	MEHHDVVSSEMFLDEFPDKHPREWTKQALITPEEAIEAYMVEVTAEFHC
Ga0307512_100009108	F008531	AGG	MSSLGVNGRTKSGEAHEHNQQFGEHESIDIGKSQRLRKEGNTRINKVSAMRPRLAKIIEKVRIS
Ga0307512_100009109	F038958	N/A	MTDVMASLFVDVDPSKAKLTLFRSGNSFLIASTVSAHSLWQMLLWVVADGRTKSPRNALYDSHSSRFDKAFHGISAETNPNMRSRFDVSW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307512_10000910

Overview

Ecosystem & Geography

Associated Families

Sequences