NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000810

Scaffold Ga0307512_10000810


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000810 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46208
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (63.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F008531Metagenome332Y
F051592Metagenome143Y
F060560Metagenome132Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000081014F051592GAGVENPLLQVVKHAGLHCMQEVGLREVTHDTGNMSKHVESSVDMARREFGIGCLGVGIAEHS
Ga0307512_1000081039F092994GGAMDLSPGRRKIPAEERAKRYTDGRCVYCGGFNDMAAECVARKKVQTFKAAGADGKEVGTGAGSKELGKEQVNGGRMALQLTEKVLF
Ga0307512_1000081049F008531N/AMTLELQSTLEASGIAWPALRNQIPCMAHVIQLALGAFTRSLSVNGRTKSWEAHECDQQIGDNESTDIGKSQRLRKEANARINKVSAMRPGLPKINEKVHIS
Ga0307512_100008106F060560GGAMINNKDGHIPSPLIMFTCTALRHALLEWQKNKGVHPKASKSRLKADRPDRSNYFNHKNDGGKIASCCAVTGRKLLISPGVADMYSFFMNTWNTLPESYQQRVYNNTFATIKRQIQQAENPTPAVVISVEAAHVENAILLDYWASKVALEEPEIGSTDPNIPIDNNCTDD
Ga0307512_100008107F006048N/AMVDIACSNRYQVRTQVNKVKSHFIQSARDNIAELYDLHRLESAAEHLEFIDSLLADNKNLFRVAERVEGGVDGPNPTRRESKADNERLVSTSRPGGSNPAVYLYQISSSG
Ga0307512_100008108F004891GGAMIAWASGFGMGVGRFSRPLRGVGVLAIPDARLDTMRRVESVYSVPLGAGVLRLLVPGVEVGVIIDHRCVADGVEVMH
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