NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000715

Scaffold Ga0307512_10000715


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000715 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49325
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (41.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F019765Metagenome227Y
F079540Metagenome115Y
F081952Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000071538F079540GGAMKLTSLRAASVDFGNPNFGQLFRTQIEDDWRHEVSGLVLGYDQNVLIDSVFIKVQNGLLYYRQPFHCPTSVERLGLDCKVEYTDANQGIMPESDNIWVQYMDSDLDNTFQGQVPSFPGSYFSWTPPNQTLQFQERLPAGKSISTFSKRCKKTQQWILRPQPQEYAVVIPTKYKDPHGWADCVDGFIRVVKQTDKMHIIPVGAIVGPAHLVRENDAASDRIDNVWLVNNHVDLDTYWTV
Ga0307512_1000071552F081952N/AMVNAPKKNLSLLPAGGYGKSTKRLTQRCYNANEGKTRLEAERVRALWALRSLRSKKKLAAEKRRETHFLSNEEKE
Ga0307512_1000071553F019765GAGMLQVMDNMEASCVFYAKVGTFTHLEQSKISLLTVNKSGIVTLTVQHDMIVSVIFK
Ga0307512_1000071554F008227N/AMYTQPPPPGESGSNTGRLAGATSNINILRTQQERRHKLVHHDSANAATKHMTQDAHLKIVRKTGSRKNKKQHAVGCEFIHIEAKGGQLTV

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