Scaffold Ga0307512_10000676

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000676
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50399
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (64.79%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F048690	Metagenome	147	Y
F051592	Metagenome	143	Y
F079403	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000067616	F004891	GGA	MVLRASELGMGVGRFSRPRRGLVEVLAMPDARLDTMRRVESVCEVPPGAGVLQLLIPGKAVGVIINCRCVADGVTVTLSATPQLFSVDEEVEFGPGIEDATELPP
Ga0307512_1000067617	F010438	AGG	MELYMWNRRPFMRASNLEMLSYGTRCAAKPFAEAPHWHIIEKYWNTAMQQNNIWSIAFEACTKEILKDVC
Ga0307512_1000067630	F008531	N/A	MAHVIHLALGAFMSSLGVKGPTKSWEIHQRDHQFGENESTDIAKNQRVRKESNARTNKVWAMRSGLAMIIEKVQNSRHCE
Ga0307512_1000067637	F080709	N/A	MVELSTRKRDIRGDGGNHHEKLGLERISCGSQLTIPDTAGTSPDPAGNITNMGASKSNQASRTTDFS
Ga0307512_100006766	F051592	N/A	VRLHEVQNPLLEVVKHADLHCMEEVGLREIAHNTGHMSKHVESSVNMARRELGIRCLGVGIAERSI
Ga0307512_1000067661	F048690	N/A	MDNMEASCIFYVKVGMLTYLEQSKMTLLTLNTMEIVRLAVQHELIVSASFMQYPRDDLGQTSTVVLSLEVCPIYI
Ga0307512_100006768	F079403	N/A	MGPQNRRDGKHPDAMFKEFRALLDNTQDATHRAAIYSGTREFIKHMSRNKRYISDEQLHAMELCIYHGIKVQVEGLEGERMSQMCRCTGSQSWRRGARWNDWVWVKQHPGRCYGALNGRLPWQLQLLFKIKLLNEDGAFVEYWLAMALTTIPENSGNLDPVSKFVQVRKAPAAVALQVFSVGNIVGCAHAIPEVATSTKTCDGRNERWIVNSHMDLATWNDVYN