NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000558

Scaffold Ga0307512_10000558


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000558 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55046
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (69.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F046750Metagenome150Y
F051592Metagenome143Y
F102183Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000055820F046750GGAMIDDKDGHIPSPLIMISCTALRHALLEWHKNKGVHSKASKSKLKADRADRSNYFNCKNVSGKIASFCAVTGRNLLTSPGVADKYTFLVNTWNTLPQSYQQRVYNNTLATVDSQIQQAESLPPAMVISVEAAHVDNAILLDYLTSEVALEEPEIRSTDHNIPIDNNYTHDELHFRMPGGSGHFEDAGDESDAIPTASRRRRAAT
Ga0307512_1000055821F006048AGGAGMLNQRPTLDSTRSNRYQVRVQVHKVESHHIQSARDDIAELYDLHRCESAAERLEFIDSLLADNKYLFPIAEGVEGGVRSPNTTQRESKAANEWLASTVLLGGRNPAVYLHQILS
Ga0307512_1000055822F010438N/AMVSGRREIHLFGHSDMTRRVFATGRLVELYMWTTWPGMSATDMETVSYATRPVSNALAESPHWQIIERYWNTAMQQNNIWSIAFEARTKEILKDVC
Ga0307512_1000055823F004891GGAGMIAWDSGLGMGVGRISRPRRGVGVITMLDAWLDRTRHVEIPLGAGVLRLLVPVVAVGVFIDRRCVADGVEVTR
Ga0307512_1000055829F051592GAGVPLQEVENPLLEVVKHADLHCMEEVGPREVAHDTGNMSKQVESSMNMARREFGIGCLGVVIAERSI
Ga0307512_1000055849F102183AGGMSLVFAEEKCSRALMEFLFRTDVGRIVGVVEEAENSDHEELSDGVV
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