Scaffold Ga0307512_10000416

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000416
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62014
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (63.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F016905	Metagenome / Metatranscriptome	243	Y
F079540	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000041611	F016905	N/A	MPGHQYTQSEFALQKVVQSFGNLVLKLVEHQLTHTYTVVFHFCQLENIDYLVLRYLNSGLLHCEEFSEERLHDREV
Ga0307512_1000041628	F079540	N/A	VCRSIELTSLRDASEDFGIPNYRQLFRAQTDEDWGHEVSRLVHGYDQNVLRDSIFSKLHNGLLYYRQPCHNLTSVERLGLDCKVEYTNANQGIMPEADNIWVQYTQSEENDLDDTFQGRFPCFPVLYFSWTPPNQIFHFQEHLSAGNPILTFSKRCKITQQWVLRPQPQEYAVVIPTKYKDLHGWADCVDGFIWGVKQTNKMHIVPVGAIVGPARLVRKNASSGSMDSVWLVNNHVDIDTYWTVY
Ga0307512_1000041653	F006048	AGGAG	MLKQWRTLDITRSNRHQVRAQVDKVKSNCIQTARDNIAELYDLHRFESATELLEFIVSLQADNKYLFPVAELVEDGVRGPNPTRRESKVVNECPASTLLLGGSNPPVYQHQNLSPGE