NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000403

Scaffold Ga0307512_10000403


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000403 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63038
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (38.10%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F059517Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_100004033F059517AGGAGMLKQRPTFDITRSNWYQVRAQVDKVKSHFIQSATHNIAELYDLHRFESNAELLIFIDSLLPDNKYLFPLAERVEGGDCGPNPMQRVSKAANE
Ga0307512_1000040357F004778GGAMLAIHLKEILDCVELTDGRLLGITPVIASSQYSMTGELKSTLEASGIGCPAMKNYIPSMAHVIQLALVVFMSNLAVKGRTKSLEAHECDQQLGQNECTDIGKSHRLRREGNDRMKLGSAMQPGSAKTIE

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