NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000320

Scaffold Ga0307512_10000320


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000320 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69423
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (64.10%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036505Metagenome169Y
F051592Metagenome143Y
F081952Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000032014F051592N/AMYLQEVENPLQEVVKHASLHCMEEVRFEEFAHDTRNMSKHIQLSVNMAGRVFGIGCLGIRIADRSL
Ga0307512_1000032026F081952N/AMVNVPKKKLSPLPAGKYGKSTKRSTRRIHHANPSKSGFEAERVRALGALGSLRSKMMLAVGK
Ga0307512_1000032041F036505N/AMTHELQSTLEASGIEWPALRNQIPCMAHIIELAVGAFMSSLGVKGRTKSWEAHERDQQFRENESIDLGKSQRLRKEGNARINKVLAMEPGLAKIFEKVRISRYFETAEIDLHVAENACCIDYPNTWSSKRVHLL

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