NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000218

Scaffold Ga0307512_10000218


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000218 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80132
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (62.20%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Pyronemataceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F036505Metagenome169Y
F046750Metagenome150Y
F051592Metagenome143Y
F059517Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000021835F036505AGGAMVHVIQLALGAFMSSLGAKGHSKSWEAHEPNQQFGENECNVIGNSQRHRNEGNARINKVSARRPCCAKIIEKGRISRYFESPETDLHIAEIVCCTDYADTWSPKRVH
Ga0307512_1000021860F046750GGAMIDAKDGHIPSPLTMIKCTALRYALVEWQRNKGVHPKVSKSKLKVDRPDSMNYFNYKNDGGKNASCCAATGRKLSTSPGVADTYTFLINAWNTLLESYQQRVYKNTLATVKRQIQQAENPMPAKVISVEAARVYNPLLLDVLTSEVALEEPGFGGTDQNILIDLNCTDDELHFGIPGGSQDYEHEGDEGNDGLRLNSRGLTWEQVMSMGMRATMAMMRMRMWRKKHC
Ga0307512_1000021861F059517AGGAGMLKQLPRLDITRSNRYQVRAHVDNIKSHCIPSARDYIAERYNLHHFESTAEYLEFIDSLLADNQYLFPVAERVEGGVHGPKPTQRESQAANQ
Ga0307512_1000021862F004891GGAMSVGRCSRRLSGVGVLGMQDAGLDTTRGVGSVREVCPGAGVLQLLVPGVAVRVSIDHRGIADRVEATG
Ga0307512_1000021871F051592GAGMRLHEVENPLLEVVKHADLHCMDEVGLREVTPDTGNMSKRLKSLVNVARREFSIGCLSVGVAERSI
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