Scaffold Ga0307512_10000207

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000207
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81365
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (72.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F019765	Metagenome	227	Y
F026456	Metagenome	197	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000020724	F089625	N/A	MMLLSIATGLSLNQAESQPVQSNQDENNYGQQQMMNGQYFKMRVNGASTICVLVNTAIHQ
Ga0307512_1000020728	F026456	GGA	MRALAKQKIPWKEDLFFAVKLARQKLSKYYAEVTPTTGMLLNSGHILDSFRKLRSFRKWDKEMDIHPEDETSYTT
Ga0307512_1000020729	F004778	N/A	VLVRFELTDRHLLGIMTDNASSNYSMTPELQSTLVASGIELPALKNDIPCSAHVIQLASGAFISSLGVKGCTKSWIAHERDQQFGENESIDIGQSQRLRKESNATINKVSAMRPGLAKIIEKVPISVYFESPKADLHKAKNTCCINFANTWLRKQVY
Ga0307512_1000020734	F019765	GAG	MLQVLDNMELRCICYVKVSTFTHLEQSIIALMTVNKSGKMTLTVQHDKIVNVSFI
Ga0307512_1000020735	F008227	N/A	MDIQPPPEDESGSNTGRLAGASSNTELLVTQQEHRHMSVHHDAANVATKHMTQDAHLKIVRKTGSSKNKLQHAVGCENILIVANGSQ