Scaffold Ga0307512

Basic Information
Taxon OID	3300030522 Open in IMG/M
Scaffold ID	Ga0307512_10000155 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	90937
Total Scaffold Genes	101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (41.58%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

90937

Total Scaffold Genes

101 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (41.58%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.6996	Long. (^o)	-121.669	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.6996

Long. (^o)

-121.669

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026456	Metagenome	197	Y
F047400	Metagenome	149	Y
F048690	Metagenome	147	Y
F059517	Metagenome	133	Y
F079403	Metagenome	115	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000015512	F059517	AGGAG	MLKQQPMLDITRSNRYHVRPQVNTVESHFIPSATDNMAELYDLHHFESNTEHLEFIDSLLADNKNLFPLAEHVEGGVCGPNPMQRVSKAANE
Ga0307512_1000015513	F047400	GGA	MNAFVLLPLQESMAQRGAGKHDQWRGYMTVLVVNHGSIESISIPSAGIHPMIKFDVDKQRDCFCQEVKWMLAIR
Ga0307512_1000015540	F079403	N/A	MRPQNQCDGMHPDTMIKDFRALLDNMQDATHRTAIYSGMLECIKHKSHNMTYILDEQLPAMELCIYHGIKVQVEGLEGECISQMCRCSQSQSWCGGVRRNDWVWVKPSLGWCYSTLNGRLLWQLHRLFKIWLLNEDGAFVEYCVALAVTTIPENSRNLDPVMIFVPVRNALAASALHVFSVGNIVGCVHVIPEIATSSMTGDGSNKXWIVNSQINLATWNDVYYE
Ga0307512_1000015584	F089625	GAG	MIIPLGFAAGPSLNHAERQPMKSNEDENNYRRQQMMNGQYITMSVNGASTICGVVSTVIH
Ga0307512_1000015586	F026456	N/A	MFDHMDGVMRALAKKKTQWQEDLFLAVKLAPQKLSKYYAEVIPTTGMLLISAHILDPFQNLRSFRKWDKGMDINLEDETSYTKQYQEAFLKYGENE
Ga0307512_1000015591	F048690	GAG	MLQVTDNMEASCVFYVKVGTFTHLEQSKISLLTVNKSGIVTLTIQHDMIVSVIFMQYPRDYLRQTSADVLTLEEHPINI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307512_10000155

Overview

Ecosystem & Geography

Associated Families

Sequences