Scaffold Ga0307512_10000151

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000151
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91758
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (64.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F026456	Metagenome	197	Y
F042672	Metagenome	157	Y
F046750	Metagenome	150	Y
F079413	Metagenome / Metatranscriptome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_10000151101	F004778	N/A	LKDVLDGFDYTDGCLLGITTDNASSNYWMTHKLRSTLEASGIEWPALRNPIPCMAYIIQLALCAFICSVGVKGRIKSWEAHEHNPQFGKNECIDIGKSQRLRKKGSARINKMSAMRPGLARIIEKVRISTYFESPDSDFHVGENGCSIDYADTWASE
Ga0307512_1000015114	F080709	N/A	MVELSTRKREIRGDGGKHHEKLGLKRISCASQMTIPYTAGTSPDPRGNNTGTRSSKPNQASRTPDFS
Ga0307512_100001512	F079413	N/A	LVLRSETDLQIQFKDLLFDNAYLFKVVDNKESSFTRMEVLDHIYHQFFLTANSLGPQPMTSQHIQPLAPQTLALVATAIHCAPSEYASGKKATGMFSQDEY
Ga0307512_1000015134	F026456	GGA	MSQRQTVTLHHVITVYNDMFDHMDGVMRALAKTKSPWKEDLFFAMKLARKKRSKYYAVVTPSMGMLLISAHILDPCRMSRSFRMWDKGMHINPEDETSYTTQCQEAFLKYVANEYCANH
Ga0307512_1000015138	F042672	N/A	MFCPQVQEEAVVIPTMYKDPHGGGDWVDRFIRVVKQTDTMHIAPVGAIVGPANLGQENTALDKIDSVWLVNNHVALETYWTVY
Ga0307512_1000015190	F046750	GAG	VVYAVQIQCRECQKLLTNKQRPLHFLAEVIPGLIYIKYCHWANNRGEYADGLYNSTINNKDGHIPSPLIKFTSTALRHALLAWQKKNGVPPKASKSRLKAKRPDHLNDFNYKNDGGMYASCHAAMGRKLLTSPGIADTYTILMNTWNTLPESYQQRVLTNTHATVKRQIQQAENPMPAEVISTESVHVDNPIHLDYLTSEVALEEPEIGSTDPNIPIDNNCMYDELRFRMPGSSNDYDDEGGEIDESDAIPTASWQ