Scaffold Ga0307512_10000114

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000114
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102129
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (43.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022123	Metagenome	215	Y
F081952	Metagenome / Metatranscriptome	113	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000011414	F081952	N/A	MVNGPKKNLSPLPADKYGKSTERFTPRCHQANEPQSGLEAEQVGALGALRSLRSNKTLLAGKQPETHFLSNEEKQK
Ga0307512_1000011467	F022123	N/A	MFATIALTSYHDLPDSISISTHSDPHSRMXEYDRDCTSRTNWFDFAGTHCSLSEPEPFNAFGSIEGLLNTEEDDLILPTYFWEQSDIPSPWNIYWTEATAYGGGLELDNPVFGNSWAKYWGAHTWFDCDPELPXECEGCNCLGTNSMEGHAPAAVATAKRAPVPLIVIEPPTPTPSEIDLYNWHW
Ga0307512_1000011470	F092994	AGGAG	VAGYTGPAPMDLSTGKRRISAEERAKTFTDGRCLYCGGFNHRAAECVARKKAQMFKAAGAEIKEVGTGTDSKESGKEQVN